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. 2016 Oct 3;66(2):93–98. doi: 10.1007/s10858-016-0056-7

Table 1.

Assignments, secondary structural environment inferred (where possible) from δCα−δCβ, and amino acid composition, of murine fur in descending order of abundance (excluding cysteine/cystine, and tryptophan)

Amino acid Assignments 2′ary Struct. Mole %a
C=O δCα−δCβ Cγ’
E/Qb 13.58
G 172 43 43 12.95
S 59 67 −8 S 10.45
P 60 30 30 25 48 S 8.35
L 175 55 40 15 24 24 H 7.45
R 55b 25b 30 25b 40b 156 H 7.32
D/Nb 6.33
Y 174 54 36 18 130 130 116 156 C 5.67
T 175 63 65 -2 20 H 5.58
V 63 30 33 19 19 H 5.41
A 173 51 24e 27 S 5.14
K 55b 32b 23 25b 25b 40b S 3.68
F 174 54 36 18 140 c 130 130 137 C 2.95
I 173 63 36 27 26 14 12 S 2.93
Hd 1.18
Md 1.02

Bold = High degree of certainty of assignment

H Helix, S Sheet, C Coil

a Mean of 3 measurements, of which no standard deviation was greater than 0.4 % for any amino acid

b No signals from these spin systems are uniquely resolved

c High frequency shoulder on prominent signal at ca. 130 ppm

d Not observed with confidence on account of low abundance

e The Ala β-CH3 has been previously assigned at ca. 15 ppm on the basis of chemical shift and model peptide examples (Kricheldorf and Muller 1984; Yoshimizu and Ando 1990), and at ca. 18 ppm in solubilized SCMKB and denatured SMCKA (Nishikawa et al. 1998b). We do not observe the Cβ−Cα cross peak in the DQF spectrum which would occur at (F2, F1) co-ordinates of ca. (15–18, 65–70) if this assignment were correct. Accordingly we make the tentative assignment shown on the basis of the PDSD—see slice 1537 in Fig. S6. We have noticed (but not quantified) that isotope labelling of non-essential amino acids tends to be lower than of essential amino acids, probably due to de novo biosynthesis from unlabelled carbohydrates. This and the comparatively low abundance of Ala (5 %) may explain our failure to observe the expected Ala spin system with confidence