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. 2016 Jul 15;78(10):1583–1594. doi: 10.1292/jvms.16-0264

Table 1. Comparison of nucleotide and amino acid length between APMV/Shimane67, APMV-1, -9 and-12.

Gene APMV/Shimane67 APMV-1/LaSota APMV-1/415 APMV-1/SF02 APMV-9/NY APMV-12/ITA/3920-1
Full genome (nt) 16,146 15,186 15,198 15,192 15,438 15,132
Leader (nt) 55 55 55 55 55 55
Trailer (nt) 776 114 114 114 47 60
N 3’-noncoding (nt) 60 66 66 66 66 66
ORF (nt) 1,482 1,470 1,470 1,470 1,470 1,482
5’-noncoding (nt) 179 210 210 217 192 162
Total (nt) 1,721 1,746 1,746 1,753 1,728 1,710
Amino acid 493 489 489 489 489 493
N-P intergenic (nt) 14 2 2 1 19 7
P 3’-noncoding (nt) 95 83 83 83 113 95
ORF (nt) 1,194 1,188 1,200 1,188 1,260 1,218
5’-noncoding (nt) 223 180 180 180 248 190
Total (nt) 1,512 1,451 1,463 1,451 1,621 1,503
Amino acid 397 395 399 395 419 405
P-M intergenic (nt) 1 1 1 1 6 3
M 3’-noncoding (nt) 34 34 34 34 34 34
ORF (nt) 1,101 1,095 1,095 1,095 1,095 1,095
5’-noncoding (nt) 200 112 112 112 161 151
Total (nt) 1,335 1,241 1,241 1,241 1,290 1,280
Amino acid 366 364 364 364 364 364
M-F intergenic (nt) 2 1 1 1 30 11
F a) 3’-noncoding (nt) 45 46 46 46 55 52
ORF (nt) 1,638 1,662 1,662 1,662 1,656 1,641
5’-noncoding (nt) 175 84 84 84 67 88
Total (nt) 1,858 1,792 1,792 1,792 1,778 1,781
Amino acid 545 553 553 553 551 546
F-HN intergenic (nt) 14 31 31 31 22 61
HN 3’-noncoding (nt) 92 91 91 91 97 91
ORF (nt) 1,833 1,734 1,851 1,716 1,740 1,845
5’-noncoding (nt) 145 177 59 195 293 136
Total (nt) 2,070 2,002 2,001 2,002 2,130 2,072
Amino acid 610 577 616 571 579 614
HN-L intergenic (nt) 25 47 48 47 0 42
L 3’-noncoding (nt) 13 11 11 11 11 11
ORF (nt) 6,600 6,615 6,615 6,615 6,633 6,609
5’-noncoding (nt) 150 77 77 77 69 106
Total (nt) 6,763 6,703 6,703 6,703 6,713 6,727
Amino acid 2,201 2,204 2,204 2,204 2,210 2,202

a) The nucleotide sequence of APMV/Shimane67 F gene was reported by Yamamoto et al. [46].