Table 1.
Sequencing of parental lines and bulks and mapping of sequence reads
| Genotypes | Number of bulked lines | Number of reads | Unmapped read (%) | Genome coverage (%) | Average depth (X) |
|---|---|---|---|---|---|
| ICC 4958a | – | 29299428 | 0.39 | 96.35 | 6.52 |
| High 100SDW bulkb | 15 | 17795370 | 0.29 | 81.73 | 3.18 |
| Low 100SDW bulkb | 15 | 20670924 | 0.29 | 81.53 | 3.17 |
| High RTRbulkb | 15 | 17954432 | 0.28 | 81.94 | 3.21 |
| Low RTRbulkb | 15 | 17574432 | 0.29 | 81.05 | 3.17 |
a
ICC 4958 short reads were aligned to the publicly available chickpea genome of CDC Frontier (Varshney et al., 2013), a kabuli chickpea variety.
b
The short reads of bulks were aligned to the ICC 4958 assembly developed by replacement of SNPs between ICC 4958 and CDC Frontier.