Skip to main content
. Author manuscript; available in PMC: 2017 Apr 3.
Published in final edited form as: Nat Genet. 2016 Oct 3;48(11):1443–1448. doi: 10.1038/ng.3679

Figure 3. Accuracy of reference-based phasing in GERA benchmarks.

Figure 3

We phased trio parents in each GERA sub-cohort using a reference panel generated from all other non-familial samples in the same sub-cohort. We ran each method with default parameter settings on all 22 autosomes and computed aggregate mean switch error rates; error bars, s.e.m. Standard errors for the European-ancestry sub-cohort are over 400 parent samples. Standard errors for the other three sub-cohorts are over 25 SNP blocks. Numeric data and additional benchmarks varying the number of conditioning haplotypes used by each method are provided in Supplementary Table 4.