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. Author manuscript; available in PMC: 2017 Apr 3.
Published in final edited form as: Nat Genet. 2016 Oct 3;48(11):1443–1448. doi: 10.1038/ng.3679

Figure 4. Accuracy of reference-based phasing using the 1000 Genomes and HRC panels.

Figure 4

We phased 32 trio children from the 1000 Genomes CEU population using either the 1000 Genomes Phase 3 reference panel or the Haplotype Reference Consortium panel (excluding trios in either case). We analyzed chromosome 1, and to emulate a typical use case, we restricted the data to 31,853 markers (genotyped on 23 and Me chips). We plot mean switch error rates; error bars, s.e.m. over samples. Numeric data and additional benchmarks on other 1000 Genomes populations are provided in Supplementary Table 5.