Table 2.
Erysipelothrix rhusiopathiae isolates identified within wild ungulate populations sampled across northern North America between 2010 and 2014.
| Animal ID | Species | Date sampled (month-year) | Location | Feces | Heart | Ileum | Kidney | Liver | Lymph node | Lung | Marrow | Muscle | Spleen | Tonsil | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SAMPLE GROUP 1 | |||||||||||||||
| 172 | Muskox | July-12 | Banks | 1 | 2 | 3 | |||||||||
| 173 | Muskox | July-12 | Banks | 1 | 1 | 3# | |||||||||
| 174 | Muskox | July-12 | Banks | 1 | 1 | 1 | 1 | 4 | |||||||
| 969 | Muskox | Aug-12 | Banks | 1 | 1 | 2 | 4 | ||||||||
| 971 | Muskox | Aug-12 | Banks | 2 | 1 | 2 | 5 | ||||||||
| 972 | Muskox | Aug-12 | Banks | 1 | 1 | 2 | 4 | ||||||||
| AMX7* | Muskox | July-13 | Banks | 1 | 1 | ||||||||||
| MX10-1 | Muskox | Aug-10 | Victoria | 1 | 1 | PLN | 1 | 4 | |||||||
| MX10-2 | Muskox | Aug-10 | Victoria | 1 | 1 | ||||||||||
| MX10-3** | Muskox | Aug-10 | Victoria | MLN, PSLN | 2 | 4 | |||||||||
| MX11-1 | Muskox | Aug-11 | Victoria | 1 | 1 | 1 | 1 | 4 | |||||||
| MX11-2 | Muskox | Aug-11 | Victoria | 1 | 1 | 1 | MLN | 1 | 5 | ||||||
| MX11-3 | Muskox | Aug-11 | Victoria | 1 | 1 | ||||||||||
| VI10-23 | Muskox | Mar-10 | Victoria | 2 | 2 | ||||||||||
| SAMPLE GROUP 2 | |||||||||||||||
| AKM1 | Muskox | Aug-12 | AK-NSP | 1 | 1 | ||||||||||
| AKM3 | Muskox | Aug-12 | AK-NSP | 6 | 6 | ||||||||||
| AKM7 | Muskox | Aug-12 | AK-CT | 1 | 1 | ||||||||||
| AKM10 | Muskox | May-11 | AK-NSP | 1 | 1 | ||||||||||
| AKM14 | Muskox | July-11 | AK-NSP | 1 | 1 | ||||||||||
| AKM19 | Muskox | May-11 | AK-NSP | 1 | 1 | ||||||||||
| SAMPLE GROUP 3 (I) | |||||||||||||||
| SK69 | Caribou | May-13 | BC | 1 | 1 | ||||||||||
| SKSLP2* | Caribou | April-13 | BC | 1 | 2 | 1 | 1 | 5 | |||||||
| SK11 | Caribou | Sept-13 | BC | 1 | 1 | ||||||||||
| SK18 | Caribou | April-14 | BC | 2 | 2 | ||||||||||
| SK106 | Caribou | July-13 | BC | 1 | 1 | ||||||||||
| SK133 | Caribou | July-13 | BC | 1 | 1 | ||||||||||
| BC1015 | Caribou | Feb-14 | BC | 2 | 2 | ||||||||||
| Sample Group 3 (II) | |||||||||||||||
| F440+ | Caribou | May-13 | AB | 3 | 3 | ||||||||||
| F446 | Caribou | May-13 | AB | 1 | 1 | ||||||||||
| F786 | Caribou | Oct-13 | AB | 1 | 1 | ||||||||||
| F793 | Caribou | May-13 | AB | 1 | 1 | ||||||||||
| Grizzly | Caribou | Sept-14 | AB | 1 | 1 | ||||||||||
| 2197 | Caribou | May-14 | AB | 2 | 2 | ||||||||||
| SAMPLE GROUP 3 (III) | |||||||||||||||
| AN540 | Moose | Feb-14 | BC | 1 | 1 | ||||||||||
| AN541 | Moose | Feb-14 | BC | 2 | 2 | ||||||||||
| AN551 | Moose | Mar-14 | BC | 1 | 1 | ||||||||||
| AN557 | Moose | Unk-14 | BC | 1 | 1 | ||||||||||
| AN562 | Moose | April-14 | BC | 2 | 2 | ||||||||||
| AN569 | Moose | Jun-14 | BC | 1 | 1 | ||||||||||
| AN570 | Moose | Mar-14 | BC | 1 | 1 | ||||||||||
Sample Groups and locations are shown in Figure 1. The number of isolates sequenced from each individual are shown, including a breakdown by sample type.
AB, Alberta, Canada; AK-CT, Cape Thompson, Alaska, US; AK-NSP, Northern Seward Peninsula, Alaska, US; Banks, Banks Island, Northwest Territories, Canada; BC, British Columbia, Canada; Victoria = Victoria Island, Nunavut, Canada; MLN, mesenteric lymph node; PLN, pharyngeal lymph node; PSLN, pre-scapular lymph node.
Technical replicate: isolates were re-cultured from frozen glycerol stock, re-extracted, and re-sequenced during a later run.
Technical replicates performed on two isolates.
One isolate was provided directly by the Canadian Wildlife Health Cooperative; the tissue of origin is unknown.
2 different marrow samples.