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. 2016 Nov 3;99(5):1217–1219. doi: 10.1016/j.ajhg.2016.09.017

Figure 2.

Figure 2

PCA Results on European Populations from the 1000 Genomes Project

We preformed quality control, a Hardy-Weinberg equilibrium test, and linkage-disequilibrium filtering as described in Galinsky et al.1 by using PLINK 1.9.8 After that, a total of 1,063,058 SNPs were analyzed in FastPCA.