Table 1. Overview of the RNA-Seq statistics.
| Sample name | BM-LA14526 normal | BM-LA14526 mid-term | BM-LA14526 VPNC | BM-LA14527 normal | BM-LA14527 mid-term | BM-LA14527 VPNC | BM-LA14528 normal | BM-LA14528 mid-term | BM-LA14528 VPNC |
|---|---|---|---|---|---|---|---|---|---|
| Total reads | 21,600,338 (100%) | 20,654,358 (100%) | 15,525,486 (100%) | 24,368,138 (100%) | 17,457,014 (100%) | 18,939,482 (100%) | 22,294,928 (100%) | 18,457,718 (100%) | 17,205,716 (100%) |
| Total mapped | 20,470,722 (94.77%) | 19,569,997 (94.75%) | 14,251,928 (91.80%) | 23,216,282 (95.27%) | 15,620,186 (89.48%) | 18,223,708 (96.22%) | 21,186,600 (95.03%) | 16,523,467 (89.52%) | 15,486,900 (90.01%) |
| Multiple mapped | 36,045 (0.17%) | 20,995 (0.10%) | 74,471 (0.48%) | 29,973 (0.12%) | 22,786 (0.13%) | 13,647 (0.07%) | 27,634 (0.12%) | 25,583 (0.14%) | 1,961 (0.01%) |
| Uniquely mapped | 20,434,677 (94.60%) | 19,549,002 (94.65%) | 14,177,457 (91.32%) | 23,186,309 (95.15%) | 15,597,400 (89.35%) | 18,210,061 (96.15%) | 21,158,966 (94.90%) | 16,497,884 (89.38%) | 15,484,939 (90.00%) |
| Read 1 mapped | 10,235,304 (47.38%) | 9,783,949 (47.37%) | 7,125,546 (45.90%) | 11,607,869 (47.64%) | 7,809,982 (44.74%) | 9,111,555 (48.11%) | 10,592,610 (47.51%) | 8,261,955 (44.76%) | 7,743,832 (45.01%) |
| Read 2 mapped | 10,235,418 (47.39%) | 9,786,048 (47.38%) | 7,126,382 (45.90%) | 11,608,413 (47.64%) | 7,810,204 (44.74%) | 9,112,153 (48.11%) | 10,593,990 (47.52%) | 8,261,512 (44.76%) | 7,743,068 (45.00%) |
| Reads mapped to plus strand | 10,263,988 (47.52%) | 9,805,062 (47.47%) | 7,149,891 (46.05%) | 11,622,821 (47.70%) | 7,831,148 (44.86%) | 9,126,824 (48.19%) | 10,605,945 (47.57%) | 8,286,177 (44.89%) | 7,765,000 (45.13%) |
| Reads mapped to minus trand | 10,206,734 (47.25%) | 9,764,935 (47.28%) | 7,102,037 (45.74%) | 11,593,461 (47.58%) | 7,789,038 (44.62%) | 9,096,884 (48.03%) | 10,580,655 (47.46%) | 8,237,290 (44.63%) | 7,721,900 (44.88%) |
| Reads mapped in proper pairs | 10,088,758 (46.71%) | 9,611,492 (46.53%) | 6,974,625 (44.92%) | 11,341,306 (46.54%) | 7,603,573 (43.56%) | 8,958,329 (47.30%) | 10,374,070 (46.53%) | 8,051,562 (43.62%) | 7,554,130 (43.90%) |
| Duplication | 10,919,783 (50.55%) | 10,650,511 (51.57%) | 6,285,061 (40.48%) | 12,336,153 (50.62%) | 7,652,263 (43.83%) | 9,506,626 (50.19%) | 10,441,104 (46.83%) | 6,359,654 (34.46%) | 5,899,639 (34.29%) |
| Expressed genes | 1814 | 1818 | 1815 | 1818 | 1812 | 1819 | 1819 | 1819 | 1814 |