Table 2. Most significant interactions associated with AF (P < 5 × 10−7).
AF SNP |
Interacting SNP |
Interaction effects |
Replication |
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SNP | Closest gene | SNP | Locus | Closest gene | Location | Coding allele | CAF$ | Meta P value | OR+ | 95% CI* | P value | OR+ | 95% CI* | P value |
rs7164883 | HCN4 | rs4980345 | 15q25.3 | SLC28A1 | Intron | T | 0.06 | 0.78 | 1.44 | 1.27–1.65 | 4.3 × 10−8 | 0.94 | 0.74–1.20 | 0.64 |
rs10821415 | C9orf3 | rs1492056 | 3p14.1 | MITF | Intergenic | A | 0.43 | 0.37 | 1.15 | 1.09–1.21 | 1.4 × 10−7 | 0.91 | 0.84–0.99 | 0.04 |
rs12415501 | NEURL | rs699801 | 1p31.1 | CRYZ | Intergenic | T | 0.45 | 0.83 | 1.19 | 1.12–1.27 | 1.9 × 10−7 | 1.01 | 0.90–1.13 | 0.91 |
rs2106261 | ZFHX3 | rs12652090 | 5q34 | TENM2 | Intergenic | A | 0.11 | 0.43 | 1.31 | 1.18–1.45 | 2.1 × 10−7 | 1.02 | 0.87–1.20 | 0.80 |
rs1448818 | PITX2 (2) | rs693832 | 8p21.1 | MIR3622B | Intergenic | C | 0.11 | 0.36 | 1.27 | 1.16–1.39 | 3.1 × 10−7 | 1.03 | 0.89–1.19 | 0.72 |
rs3807989 | CAV1 | rs3802477 | 9q22.33 | GABBR2 | Intron | C | 0.05 | 0.30 | 1.35 | 1.20–1.52 | 3.6 × 10−7 | 1.05 | 0.86–1.27 | 0.64 |
rs3807989 | CAV1 | rs2327995 | 6p22.3 | ATXN1 | Intron | G | 0.27 | 0.74 | 1.15 | 1.09–1.22 | 4.3 × 10−7 | 1.05 | 0.95–1.15 | 0.32 |
rs1448818 | PITX2 (2) | rs2328452 | 20p11.23 | RIN2 | Intergenic | G | 0.88 | 0.92 | 1.25 | 1.15–1.37 | 4.7 × 10−7 | 0.94 | 0.82–1.08 | 0.37 |
rs12415501 | NEURL | rs7946907 | 11p15.2 | SPON1 | Intron | A | 0.54 | 0.05 | 1.18 | 1.11–1.26 | 4.7 × 10−7 | 1.07 | 0.96–1.20 | 0.23 |
$CAF: coding allele frequency; +OR: odds ratio; *CI: confidence interval.