Table 3. Modification detection by SMRT sequencing.
Enzyme | MTase construct | m6A%detected | m4C%detected | Coverage |
---|---|---|---|---|
PacII | RCAAY | CCC | ||
Native organism | 95.4 | 84.5 | 41X | |
M1 + M2 + S | 93.7 | 63.0 | 30x | |
M1-APPA + M2 + S | – | 56.6 | 43x | |
M1 + M2-APPA + S | 90.7 | 24.9 | 36x | |
M1 + S | 61.7 | – | 81x | |
M2 + S | – | – | 90x | |
BceNI | GAG | CCC | ||
Native organism | 97.4 | 66.4 | 38x | |
M1 + M2 + S | 98.6 | 90.2 | 49x | |
M1-APPA + M2 + S | – | 45.5 | 60x | |
M1 + M2-APPA + S | 82.3 | – | 52x | |
M1 + S | 46.6 | – | 40x | |
M2 + S | – | – | 90x | |
Mma5219I | GCA | TCY | ||
Native organism | 94.0 | 72.4 | 42x | |
M1 + M2 + S | 73.4 | 33.0 | 26x | |
M1-APPA + M2 + S | – | – | 29x | |
M1 + M2-APPA + S | 89.6 | – | 51x | |
M1 + S | 80.2 | – | 40x | |
M2 + S | – | – | 65x | |
DbaKI | GAAG | GCC | ||
Native organism | 91.9 | 68.8 | 29x | |
M1 + M2 + S | 100 | 97.7 | 46x | |
M1-APPA + M2 + S | – | 100 | 144x | |
M1 + M2-APPA + S | 100 | 98.7 | 99x | |
M1 + S | 35.9 | – | 60x | |
M2 + S | – | – | 51x |
M-APPA indicates catalytic mutant (NPPF or NPPY to APPA) of the indicated MTase subunit.