Chemicals, Peptides, and Recombinant Proteins |
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Polyethylenimine (PEI) |
PolySciences |
Cat#23966 |
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Critical Commercial Assays |
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Q5 Site-Directed Mutagenesis Kit |
New England Biolabs |
Cat#E0554S |
Luciferase Assay Kit |
Promega |
Cat#1501 |
GenElute Plasmid Miniprep Kit |
Sigma-Aldrich |
PLN350 |
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Deposited Data |
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1610 full-length sequences |
Dr. Andrew Rambaut |
http://www.virological.org and https://github.com/ebov/space-time
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Experimental Models: Cell Lines |
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Bat kidney cells from Hypsignathus monstrosus |
Kuhl et al., 2011 |
HypNi/1.1 |
Bat lung cells from Hypsignathus monstrosus |
Kuhl et al., 2011 |
HypLu/45.1 |
Bat lung cells from Hippsideros abae |
Kuhl et al., 2011 |
HipaLu/24.3 |
Bat kidney cells from Rousettus aegyptiacus |
Kuhl et al., 2011 |
RoNi/7.1 |
Bat kidney cells from Epomops buettikoferi |
Kuhl et al., 2011 |
EpoNi/22.1 |
Bat lung cells from Myotis daubentonii |
Kuhl et al., 2011 |
MyDauLu/47.1 |
Human embryonic kidney cells |
ECACC |
HEK293T; RRID: CVCL_0063 |
Human bronchial epithelial cells |
Reddel et al., 1989 |
BEAS-2B; RRID: CVCL_0168 |
Human lung alveolus cells |
Smith, 1977 |
A549; RRID: CVCL_0023 |
Human hepatoma cell line |
Nakabayashi et al., 1982 |
HuH7; RRID: CVCL_0336 |
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Recombinant DNA |
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GIN_1316_opt_pcDNA3.1(+): Codon optimized version of GenBank: AKG65286.1 in pCDNA3.1 plasmid vector |
GenScript |
GIN_1316_opt |
pTG126 Luciferase encoding plasmid |
François-Loïc Cosset |
pTG126 |
phCMV-5349 MLV Gag/Pol-encoding plasmid |
François-Loïc Cosset |
phCMV-5349 |
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Sequence-Based Reagents |
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Primers for SDM, see Table S1
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N/A |
N/A |
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Software and Algorithms |
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NEBaseChanger site directed mutagenesis software |
New England Biolabs |
http://nebasechanger.neb.com/ |
GTR+I+Γ model in PhyML |
Guindon et al., 2010 |
N/A |
PyMOL Molecular Graphics System, Version 1.8 |
Schrödinger |
http://pymol.sourceforge.net; RRID: SCR_000305 |
PRISM |
GraphPad Software |
Version 6.05 |