Table 3.
Nucleotide composition (%) of the unique CGMMV-derived small RNAs (with lengths of 21 and 22 nt) and of the CGMMV genomic sequence*.
| −GC(%) | −A(%) | −U(%) | −G(%) | −C(%) | GC(%) | A(%) | U(%) | G(%) | C(%) | |
|---|---|---|---|---|---|---|---|---|---|---|
| Fruit 21 nt | 42.83 ± 0.35 | 31.13 ± 0.30 | 26.04 ± 0.13 | 18.91 ± 0.16 | 23.92 ± 0.20 | 43.76 ± 0.25 | 25.54 ± 0.19 | 30.70 ± 0.07 | 23.84 ± 0.09 | 19.92 ± 0.16 |
| Fruit 22 nt | 42.07 ± 0.41 | 31.39 ± 0.31 | 26.54 ± 0.27 | 18.35 ± 0.18 | 23.73 ± 0.30 | 43.06 ± 0.44 | 25.85 ± 0.25 | 31.09 ± 0.19 | 23.38 ± 0.20 | 19.68 ± 0.25 |
| Leaf 21 nt | 39.33 ± 0.82 | 31.76 ± 0.19 | 28.91 ± 0.63 | 17.15 ± 0.47 | 22.18 ± 0.38 | 43.28 ± 0.20 | 25.43 ± 0.26 | 31.29 ± 0.46 | 23.26 ± 0.30 | 20.02 ± 0.10 |
| Leaf 22 nt | 38.54 ± 1.02 | 31.94 ± 0.27 | 29.52 ± 0.82 | 16.71 ± 0.63 | 21.83 ± 0.41 | 42.64 ± 0.17 | 25.73 ± 0.18 | 31.64 ± 0.33 | 22.91 ± 0.23 | 19.73 ± 0.08 |
| CGMMV 5′-300 bp | − | − | − | − | − | 42.3 | 34.7 | 23.0 | 19.7 | 22.7 |
| CGMMV 3′-300 bp | − | − | − | − | − | 48.3 | 20.7 | 31.0 | 26.7 | 21.7 |
| CGMMV | − | − | − | − | − | 42.99 | 25.69 | 31.32 | 23.82 | 19.17 |
*
Small RNA reads from L. siceraria were mapped to the CGMMV genome with full match and 1 mismatch.