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. Author manuscript; available in PMC: 2017 Nov 9.
Published in final edited form as: Phys Chem Chem Phys. 2016 Nov 9;18(44):30261–30269. doi: 10.1039/c6cp02509a

Table 1.

Host-guest binding free energies. The OSRW column presents the average of results from the full length of simulations, while the OSRW (10 ns) column presents values cut off at 10ns. The host molecule for all structures is cucurbit[7]uril. All free energies are given in kcal/mol. The experimental free energies hold an uncertainty of ± 0.1 kcal/mol.

Guest Guest Structure Δ G bind
Experimental BAR OSRW OSRW (10 ns)
C1 graphic file with name nihms-792629-t0004.jpg −9.9 −12.27 ± 0.92 −11.64 ± 0.42 −10.43 ± 1.01
C2 graphic file with name nihms-792629-t0005.jpg −9.6 −6.46 ± 0.65 −7.29 ± 0.20 −5.50 ± 0.05
C3 graphic file with name nihms-792629-t0006.jpg −6.6 −6.59 ± 0.74 −6.71 ± 0.74 −5.17 ± 1.03
C4 graphic file with name nihms-792629-t0007.jpg −8.4 −11.34 ± 0.89 −10.02 ± 0.25 −8.31 ± 0.75
C5b graphic file with name nihms-792629-t0008.jpg −8.5 −3.39 ± 0.97 −5.00 ± 0.11 −4.46 ± 0.26
C6 graphic file with name nihms-792629-t0009.jpg −7.9 −6.18 ± 0.69 −7.01 ± 0.35 −6.64 ± 0.07
C7 graphic file with name nihms-792629-t0010.jpg −10.1 −10.49 ± 0.66 −10.05 ± 0.09 −10.96 ± 0.78
C8 graphic file with name nihms-792629-t0011.jpg −11.8 −11.84 ± 0.68 −11.44 ± 0.09 −11.15 ± 0.76
C9 graphic file with name nihms-792629-t0012.jpg −12.6 −15.42 ± 0.71 −15.35 ± 0.29 −15.44 ± 0.65
C10 graphic file with name nihms-792629-t0013.jpg −7.9 −5.06 ± 0.91 −3.90 ± 0.26 −3.69 ± 0.68
C11 graphic file with name nihms-792629-t0014.jpg −11.1 −10.48 ± 0.64 −10.06 ± 0.25 −9.82 ± 0.34
C12 graphic file with name nihms-792629-t0015.jpg −13.3 −12.11 ± 0.70 −12.57 ± 0.03 −12.33 ± 0.16
C13 graphic file with name nihms-792629-t0016.jpg −14.1 −13.92 ± 0.65 −13.13 ± 0.13 −12.63 ± 0.52
C14 graphic file with name nihms-792629-t0017.jpg −11.6 −12.41 ± 0.72 −12.75 ± 0.59 −12.05 ± 0.58