Skip to main content
. 2016 Nov 1;111(9):1854–1865. doi: 10.1016/j.bpj.2016.08.050

Table 3.

Comparison of Observed and Predicted Interactions of KGlu or NaGlu with Globular Proteins and KGlu m-values for NTL9 Unfolding

Proteina (Preferential Interaction) Salt (Concentration) μ23 (kcal mol−1 m−1)
μ23/ASA (cal mol−1 m−1Å−2)b
Observed Predictedc Observed Predictedc
Tubulin NaGlu(1 M) 27.6 ± 3.7d 18.6 ± 4 0.9 ± 0.1 0.6 ± 0.1
BSA KGlu (0–1 molal) 22.4 ± 2.2e 18 ± 2.7 0.8 ± 0.1 0.6 ± 0.1
NaGlu (1 M) 35.9 ± 2.3d 18 ± 2.7 1.3 ± 0.1 0.6 ± 0.1
β-lactoglobulin NaGlu (1 M) 18.9 ± 0.6d 9.3 ± 1.8 1.2 ± 0.1 0.6 ± 0.1
Lysozyme NaGlu (1 M) 5.7 ± 2.5d 2.7 ± 1.2 0.9 ± 0.4 0.4 ± 0.2
Protein unfolding salt (concentration) m-value = Δμ23 (kcal mol−1 m−1) m-value/ΔASA = Δμ23/ΔASA (cal mol−1 m−1 Å−2)
Observed Predicted Observed Predicted
NTL9f KGlu (0–1.5 M) 1.9 ± 0.2 1.4 ± 0.3 1.1 ± 0.1 0.8 ± 0.1
a

Tubulin and β-lactoglobulin are dimers; BSA and lysozyme are monomers.

b

PDB files used for ASA calculations (see Table S3) are PDB: 1TUB for tubulin (59); PDB: 4F5S for BSA (60); PDB: 4TLJ for β-lactoglobulin (61); and PDB: 6LYZ for lysozyme (62).

c

Predicted μ23-values are calculated from Eq. 5 using αi-values from Table 1 and ASA information from Table S3.

d

Values of μ23 for interactions of NaGlu with native proteins at 20°C are calculated from the Donnan coefficient Γ23 ≈ −μ23/μ33 (obtained by dialysis/densimetry (19)) using μ33KGlu = 1.90 RT/m3 determined for KGlu in Fig. S1.

e

Value of μ23 for interaction of KGlu with BSA is calculated from Γ23 determined by VPO at 24–25°C (29) using μ33KGlu = 1.90 RT/m3.

f

Experimental NTL9 m-value is from Sengupta et al. (20), with an estimated experimental uncertainty of ±10%. Predicted NTL9 m-value and uncertainty are calculated from Eq. 8 using the six αi-values from Table 1 and estimates of the corresponding ΔASAi for unfolding NTL9 to the best-fit (compact) model of the denatured state ensemble at 20°C (20).