Table 2.
Comparison of Amino acid and Nucleotide identity of Ghanaian P[14] and published P[14] rotavirus strains
| Amino acid identity (%) | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RV STRAIN | P-TYPE | MG6 | Hun5 | PA169 | HAL1166 | LRU62150 | B10925 | PR/1300 | GHA-M0084 | 111-05-27 | R2775 | Bov/86 | RUBV81 | EGY3399 | BP1879 | Sp1524 | Sp813 | P14-3 | B137 |
| MG6 | P[14] | 68.9 | 68.1 | 60.9 | 50 | 70.4 | 68.9 | 62.6 | 68.9 | 68.9 | 69.1 | 68.4 | 65.4 | 53.7 | 73.1 | 65.9 | 26.4 | 75.1 | |
| Hun5 | P[14] | 88.6 | 86.3 | 68.4 | 52.9 | 85.6 | 87.8 | 73.1 | 92.4 | 89.3 | 87.9 | 88.7 | 90.2 | 55.9 | 70.1 | 82.5 | 24.2 | 69.9 | |
| PA169 | P[14] | 89.1 | 95.2 | 68.4 | 49.2 | 92.4 | 84 | 73.8 | 83.3 | 93.1 | 83.4 | 84.2 | 82.7 | 55.9 | 73.1 | 84 | 25 | 71.4 | |
| HAL_1166 | P[14] | 86 | 88.9 | 89.1 | 48.5 | 69.1 | 67.6 | 64.4 | 64.6 | 69.1 | 69.4 | 70.1 | 68.4 | 72.1 | 65.6 | 66.1 | 23.5 | 63.9 | |
| LRU62150 | P[14] | 80.1 | 80.8 | 79.7 | 79.4 | 50 | 52.2 | 45.9 | 52.9 | 47.7 | 52.5 | 53.2 | 51.4 | 51.4 | 50.3 | 47 | 20.7 | 50.7 | |
| B10925 | P[14] | 89.6 | 94.8 | 97.4 | 89.1 | 79.7 | 84 | 73.8 | 82.5 | 91.6 | 82.7 | 83.4 | 81.9 | 59.7 | 77.6 | 89.3 | 25 | 76.6 | |
| PR/1300 | P[14] | 88.9 | 95.9 | 94.8 | 88.6 | 80.8 | 94.5 | 73.1 | 86.3 | 87.8 | 84.9 | 85.7 | 84.2 | 56.7 | 69.4 | 78 | 24.2 | 68.4 | |
| GHA-M0084 | P[14] | 83.2 | 87.7 | 87.9 | 83.9 | 75.4 | 87.7 | 87.9 | 70.8 | 76.8 | 72.5 | 72.5 | 71.1 | 50.7 | 64.4 | 70.8 | 25.7 | 62.9 | |
| 111-05-27 | P[14] | 88.9 | 97.4 | 94.1 | 87.2 | 80.4 | 93.6 | 95.2 | 87 | 86.3 | 84.9 | 85.7 | 89.4 | 58.2 | 68.6 | 80.3 | 25.7 | 67.6 | |
| R2775 | P[14] | 88.9 | 96.4 | 97.6 | 89.1 | 79.4 | 96.9 | 96.2 | 89.3 | 95.2 | 87.9 | 88.7 | 87.2 | 57.4 | 72.3 | 83.3 | 25 | 71.4 | |
| Bov/86 | P[14] | 88.9 | 95.5 | 94.1 | 89.1 | 80.6 | 93.6 | 94.8 | 87.9 | 94.3 | 95.7 | 99.2 | 85.8 | 59.2 | 71.1 | 75.9 | 24.8 | 70.1 | |
| RUBV81 | P[14] | 88.4 | 95.5 | 94.1 | 89.1 | 81.1 | 93.6 | 94.8 | 87.7 | 94.3 | 95.7 | 99.5 | 86.5 | 60 | 71.8 | 76.6 | 24.1 | 70.8 | |
| EGY3399 | P[14] | 88.2 | 96.2 | 94.3 | 89.3 | 80.8 | 93.8 | 94.5 | 87.2 | 95.5 | 95.5 | 95 | 95 | 59.7 | 67.9 | 79.6 | 25.7 | 66.9 | |
| BP1879 | P[14] | 78.7 | 79.9 | 79.9 | 85.3 | 75.2 | 80.8 | 80.4 | 74.7 | 80.8 | 80.6 | 80.8 | 80.8 | 81.1 | 60.7 | 53.7 | 20.7 | 58.9 | |
| Sp1524 | P[14] | 89.6 | 89.6 | 90.3 | 86.7 | 79 | 91.5 | 89.3 | 84.4 | 88.6 | 90.3 | 89.3 | 89.3 | 88.4 | 80.4 | 73.8 | 21.4 | 91.7 | |
| Sp813 | P[14] | 85.6 | 91.2 | 92.2 | 85.6 | 76.6 | 94.1 | 90 | 85.1 | 90.3 | 91.7 | 88.9 | 88.9 | 90.5 | 76.1 | 88.3 | 25.1 | 72.1 | |
| P14-3 | P[14] | 54.2 | 54.4 | 54.9 | 53.7 | 50.9 | 54.9 | 54 | 53.5 | 55.8 | 54.4 | 54.7 | 54.4 | 54.7 | 50.4 | 52.1 | 52.3 | 22.8 | |
| B137 | P[14] | 90.8 | 90 | 90.5 | 86.7 | 80.4 | 91.9 | 89.8 | 84.1 | 89.1 | 90.8 | 89.8 | 89.8 | 88.9 | 80.6 | 96.2 | 87.7 | 52.8 | |
| Nucleotide identity (%) | |||||||||||||||||||