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. 2016 Nov 9;17:899. doi: 10.1186/s12864-016-3207-z

Table 3.

Summary statistics of RNA-Seq for PDAC xenograft models analyzed in this study

Sample Cell line Totala PFb Humanc Moused Mouse (%)e
ExpID-88 KLM-1 40315040 36210281 14306947 915402 6.01
ExpID-89 Capan-1 42088225 37433177 18147400 2041946 10.11
ExpID-90 PANC-1 42912362 38177843 18700371 2007413 9.69
ExpID-91 PK-1 36841310 33534549 14071808 5663160 28.70
ExpID-92 PK-8 37239118 33971461 15024350 2902408 16.19
ExpID-93 PK-45P 38612205 35070083 11713564 9796740 45.54
ExpID-94 PK-9 40328852 36514269 16929209 2015939 10.64
ExpID-95 MiaPaca-2 39641561 35751983 20439739 2037175 9.06

aTotal Number of reads

bNumber of reads passing Illumina’s filter

cNumber of reads assigned to human by the CASTIN system

dNumber of reads assigned to mouse by the CASTIN system

ePercentage of mouse reads, expressed by d/(c + d)