Table 3.

Location of indels in the genomes of Huperzia serrata and H. lucidula.

No.	Position	Location	Region	Motif	Size (bp)	Directiona
1	5862	rpl14-rps8	Intergenic	A	1	Insertion
2	7064	rpl36-rps11	Intergenic	G	1	Insertion
3	9953	petD	Intron	A	1	Insertion
4	20,555–20,556	rpl20-rps18	Intergenic	GG	2	Insertion
5	30,794	psaI-accD	Intergenic	T	1	Deletion
6	42,082–42,083	trnL-UAA	Exon	CC	2	Insertion
7	42,758–42,759	trnT-rps4	Intergenic	CC	2	Deletion
8	44,361–44,363	trnS-ycf3	Intergenic	GGG	3	Deletion
9	44,986–44,989	ycf3	Intron	TTC	3	Insertion
10	51,669–51,673	psaB-rps14	Intergenic	GGGGG	5	Deletion
11	51,749	psaB-rps14	Intergenic	G	1	Deletion
12	58,365	psbD-trnE	Intergenic	T	1	Insertion
13	73,875	chlB-trnQ	Intergenic	T	1	Insertion
14	75,019	psbK-psbI	Intergenic	A	1	Insertion
15	76,144	psaM-ycf12	Intergenic	A	1	Deletion
16	77,128	ycf12-trnR	Intergenic	A	1	Insertion
17	77,497–77,505	ycf12-trnR	Intergenic	CGTAGTATT	9	Deletion
18	78,117	ycf12-trnR	Intergenic	G	1	Deletion
19	81,577	atpF	Intron	A	1	Deletion
20	85,338–85,361	rpoC2	CDS	TCGGTTGCTTCACCAACAGTTTCC	24	Deletion
21	85,557–85,586	rpoC2	CDS	TTATCACTAGTTTCTTCATCACTAGTTTCT	30	Deletion
22	88,781–88,906	rpoC2	CDS	TTCAAATTCTGTCTGATCTTCTTCTAAAGAAGAATCAAATGATTCAAATTCTGTCTGATCTTCTTCTAAAGAAGAATCAAATGATTCAAATTCTGTCTGATCTTCTTCTAAAGAAGAATCAAATGA	126	Deletion
23	92,802–92,803	rpoC1	Intron	TT	2	Insertion
24	99,278–99,283	psbM	CDS	TATTAT	6	Deletion
25	100,234–100,235	trnL-ndhB	Intergenic	CC	2	Deletion
26	104,210	rps7-rps12	Intergenic	T	1	Deletion
27	122,056	chlN-ycf1	Intergenic	A	1	Insertion

Note: CDS = coding DNA sequence.

^aThe plastome of Huperzia lucidula was used as a reference.