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. 2016 Nov 11;7:1764. doi: 10.3389/fmicb.2016.01764

Table 1.

Oligonucleotide primer sequences designed to validate the genomic sequence of Clostridium estertheticum DSM 8809.

Forward (F) and reverse (R) primer Sequence (5′→′) Location/position (bp) Location/sequenced region Identity
F-ATG CAG GCA CAA CAA CCA TT Chromosome Chromosome 100%
R-AAT GCC TTT TCA AGC TCG CA 43,640–44,701 43,705–44,585

F-ATC CTC CGG TGG TTG TTG AT Chromosome Chromosome 100%
R-AAC GTT TGA CAC CAC TGC TC 1,220,689–1,221,824 1,220,800–1,221,760

F-CAG GTG GGA CGA ACT CTT CT Chromosome Chromosome 100%
R-CTC CTG TCC TGT TGC AAA CC 2,409,276–2,410,209 2,409,328–2,410,147

F-CTT CGA ATC TGT TGC AGC GA Chromosome Chromosome 100%
R-GCG ACA CTG ATG CCT ACA AG 2,794,994–2,795,848 2,795,033–2,795,834

F-TTT ACA ACC GCT GCT CCA AC Chromosome Chromosome 99%
R-GGA GGG GTA CGT GAT GGT AG 3,170,935–3,171,943 3,171,004–3,171,890 (WGS)

F-CGA GTG TCT GGT TTG CAA CA Chromosome Chromosome 100%
R-ATG GTA GGG GTT GTT GGA GG 3,671,665–3,672,574 3,671,778–3,672,460

F-CGC CTC ACT TAA AGA ACC GG Chromosome Chromosome 100%
R-TTC CGT CGG TTA GTG GTT CA 4,702,142–4,703,114 4,702,215–4,703,038

F-GAG TTA AGT GGA GGG GAG CA Chromosome NA
R-TGT GAG CAT CGT CCT GTG TA 683,264–686,661

F-TGG CAT CCA ACG ACA ATT GT Chromosome NA
R-AGA GGC ATT CGA AGT TGA AGT 1,722,582–1,725,596

F-ACC TGC GTG CTA AGT AAC CT Chromosome NA
R-AGT GGA TGC TAC AAG GCT CA 4,001,142–4,004,064

F-TAA GAT GAT GGG AGG AGC GG Plasmid Plasmid 100%
R-GAT TGC CAC TGT TTG CTT GC 675–1233 685–1,219

F-CTG AAA ATG CAG CCG TTG AT Plasmid Plasmid 100%
R-TGC AAA TAG TAC CGT TGG CA 8,101–8,757 8,113–8,743

F-GAC GAT GCC AGT GAA ACG AT Plasmid Plasmid 100%
R-ACG GTC ATT GCT CCT GAA GA 14,519–15,129 14,536–15,115