Table 3.
Sesame DEGs homologous to Arabidopsis male-sterility/reproduction genes
| Query IDa | log2FC | Subject ID | E-value | Score | Symbol | Description |
|---|---|---|---|---|---|---|
| Down-regulated, homologs of MS gene (cloned)b | ||||||
| SIN_1005144 | −10.88 | AT4G39910 | 1E-22 | 90.1 | ATUBP3 | ubiquitin-specific protease 3 (UBP3) |
| SIN_1012023 | −8.47 | AT1G69940 | 2E-140 | 407 | AtPPME1 | PPME1 |
| SIN_1020647 | −4.94 | AT4G02780 | 0 | 634 | ABC33, CPS1, GA1 | GA REQUIRING 1 (GA1) |
| SIN_1015972 | −4.78 | AT1G65470 | 2E-79 | 264 | FAS1, NFB2 | FASCIATA 1 (FAS1) |
| SIN_1008904 | −2.36 | AT1G77850 | 3E-139 | 418 | ARF17 | auxin response factor 17 (ARF17) |
| SIN_1001388 | −2.07 | AT4G21330 | 2E-36 | 129 | DYT1 | DYSFUNCTIONAL TAPETUM 1 (DYT1) |
| SIN_1013503 | −1.94 | AT3G07970 | 4E-103 | 315 | QRT2 | QUARTET 2 (QRT2) |
| SIN_1007044 | −1.67 | AT5G54680 | 6E-61 | 194 | bHLH105, ILR3 | iaa-leucine resistant3 (ILR3) |
| SIN_1020616 | −1.61 | AT2G24450 | 1E-41 | 146 | FLA3 | FASCICLIN-like arabinogalactan protein 3 (FLA3) |
| SIN_1014349 | −1.61 | AT3G13170 | 1E-172 | 488 | AtSPO11-1, AtTAF6 | ATSPO11-1 |
| SIN_1025211 | −1.52 | AT5G22130 | 6E-110 | 329 | PNT1 | PEANUT 1 (PNT1) |
| SIN_1015023 | −1.49 | AT3G54140 | 0 | 768 | ATPTR1, PTR1 | peptide transporter 1 (PTR1) |
| SIN_1008202 | −1.36 | AT4G39400 | 1.6 | 26.2 | BIN1, BRI1, DWF2 | BRASSINOSTEROID INSENSITIVE 1 (BRI1) |
| SIN_1008272 | −1.30 | AT3G48750 | 2E-91 | 280 | CDC2, CDK2 | cell division control 2 (CDC2) |
| SIN_1005880 | −1.17 | AT3G52590 | 5E-41 | 134 | ERD16, HAP4, UBQ1 | ubiquitin extension protein 1 (UBQ1) |
| SIN_1013864 | −1.14 | AT4G23850 | 0 | 1022 | LACS4 | long-chain acyl-CoA synthetase 4 (LACS4) |
| SIN_1004796 | −1.01 | AT1G50500 | 0 | 875 | HIT1, VPS53 | HEAT-INTOLERANT 1 (HIT1) |
| Upregulated, homologs of MS gene (cloned) | ||||||
| SIN_1004507 | 1.00 | AT4G34850 | 0 | 624 | LAP5 | LESS ADHESIVE POLLEN 5 (LAP5) |
| SIN_1015330 | 1.27 | AT3G23920 | 0 | 852 | BAM1, BMY7 | beta-amylase 1 (BAM1) |
| SIN_1003190 | 1.43 | AT1G02205 | 0 | 711 | CER1 | ECERIFERUM 1 (CER1) |
| SIN_1011100 | 1.84 | AT2G38110 | 0 | 735 | ATGPAT6, GPAT6 | glycerol-3-phosphate acyltransferase 6 (GPAT6) |
| SIN_1006818 | 1.97 | AT4G20050 | 0 | 558 | QRT3 | QUARTET 3 (QRT3) |
| SIN_1005329 | 2.22 | AT3G23240 | 3E-31 | 114 | ATERF1, ERF1 | ethylene response factor 1 (ERF1) |
| SIN_1009935 | 2.28 | AT3G61230 | 6E-104 | 303 | PLIM2c | GATA type zinc finger transcription factor |
| SIN_1004029 | 2.53 | AT5G14380 | 0.015 | 33.5 | AGP6 | arabinogalactan protein 6 (AGP6) |
| Downregulated, homologs of MR gene with mutant evidence | ||||||
| SIN_1026151 | −1.02 | AT2G14760 | 2E-68 | 221 | basic helix-loop-helix (bHLH) DNA-binding protein | |
| SIN_1008063 | −1.01 | AT1G26610 | 4E-22 | 99.8 | C2H2-like zinc finger protein | |
| Downregulated, homologs of MR gene with GO evidence | ||||||
| SIN_1006103 | −2.68 | AT5G57880 | 1E-24 | 101 | MPS1, PRD2 | MULTIPOLAR SPINDLE 1 (MPS1) |
| SIN_1006609 | −2.46 | AT3G47870 | 1E-37 | 137 | LBD27, SCP | LOB domain-containing protein 27 (LBD27) |
| SIN_1017022 | −1.69 | AT1G78130 | 0 | 665 | UNE2 | unfertilized embryo sac 2 (UNE2) |
| SIN_1014074 | −1.63 | AT1G01690 | 2E-48 | 170 | ATPRD3, PRD3 | putative recombination initiation defects 3 (PRD3) |
| SIN_1017944 | −1.59 | AT1G64110 | 0 | 1150 | P-loop containing nucleoside triphosphate hydrolases | |
| SIN_1022121 | −1.51 | AT4G24972 | 2E-12 | 61.6 | TPD1 | TAPETUM DETERMINANT 1 (TPD1) |
| SIN_1015497 | −1.48 | AT1G63990 | 7E-117 | 345 | SPO11-2 | sporulation 11–2 (SPO11-2) |
| SIN_1007667 | −1.43 | AT4G29170 | 3E-119 | 344 | ATMND1 | ATMND1 |
| SIN_1005858 | −1.36 | AT5G24330 | 3E-127 | 367 | ATXR6, SDG34 | Arabidopsis Trithorax-Related Protein 6 (ATXR6) |
| SIN_1015063 | −1.22 | AT3G44540 | 1E-153 | 449 | FAR4 | fatty acid reductase 4 (FAR4) |
| SIN_1001377 | −1.12 | AT1G11330 | 0 | 611 | S-locus lectin protein kinase family protein | |
| SIN_1009130 | −1.06 | AT4G25590 | 8E-89 | 258 | ADF7 | actin depolymerizing factor 7 (ADF7) |
| SIN_1016644 | −1.02 | AT1G25450 | 1E-157 | 461 | CER60, KCS5 | 3-ketoacyl-CoA synthase 5 (KCS5) |
| Upregulated, homologs of MR gene with GO evidence | ||||||
| SIN_1014884 | 1.00 | AT4G34050 | 3E-163 | 456 | CCoAOMT1 | caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1) |
| SIN_1002228 | 1.03 | AT3G28470 | 2E-39 | 144 | TDF1, ATMYB35 | Defective In Meristem Development And Function 1 (TDF1) |
| SIN_1026357 | 1.30 | AT5G23530 | 4E-101 | 305 | AtCXE18, CXE18 | carboxyesterase 18 (CXE18) |
| SIN_1012979 | 1.41 | AT5G03700 | 5E-155 | 454 | D-mannose binding lectin protein | |
| SIN_1002445 | 1.57 | AT2G37040 | 0 | 1104 | ATPAL1, PAL1 | PHE ammonia lyase 1 (PAL1) |
| SIN_1019202 | 1.66 | AT3G59530 | 0 | 608 | LAP3 | Calcium-dependent phosphotriesterase |
| SIN_1019338 | 2.29 | AT3G17220 | 3E-08 | 50.4 | ATPMEI2, PMEI2 | pectin methylesterase inhibitor 2 (PMEI2) |
| SIN_1007695 | 7.68 | AT2G19070 | 0 | 540 | SHT | spermidine hydroxycinnamoyl transferase (SHT) |
| SIN_1005049 | 7.69 | AT4G27290 | 0 | 873 | S-locus lectin protein kinase family protein | |
aThe homologue search using Blast; barabidopsis male-sterility/male-reproduction related genes in PMRD (Plant Male Reproduction Database, http://www.pmrd.org/)