Table 4.
21 DEGs with InDels prone to cause loss of function or codon change
| Gene ID | InDelaLOF | Codon-change | log2(S/F) | Annotation |
|---|---|---|---|---|
| Allele from sterile buds | ||||
| SIN_1025190 | c.1151_1151 + 1insCGa | p.Gly385fs | 10.09 | SCP18_ARATH Serine carboxypeptidase-like 18 |
| SIN_1017245 | c.435dupAa | p.Leu146fs | 3.51 | F3PH_ARATH Flavonoid 3’-monooxygenase |
| SIN_1018350 | c.889_890insTa | p.Thr297fs | 1.39 | IPT_HUMLU Adenylate isopentenyltransferase |
| SIN_1013325 | c.507_507 + 1insTTTGAAGATa | 1.28 | AB22G_ARATH ABC transporter G family | |
| SIN_1022131 | c.465 + 1_465 + 2insAa | 1.54 | DHI1L_XENTR Hydroxysteroid 11-beta-dehydrogenase 1 | |
| SIN_1007649 | c.886-2_886-1insTa | 1.47 | BGAL_MALDO Beta-galactosidase | |
| SIN_1001108 | c.934-2_934-1insCCa | 4.33 | E13B_WHEAT Glucan endo-1,3-beta-glucosidase | |
| SIN_1010915 | c.855dupT | p.Pro286fs | 4.20 | R1B14_SOLDE late blight resistance protein |
| SIN_1025700 | c.318_319insCTGGAA | p.V106_A107insLE | −1.00 | SCL32_ARATH Scarecrow-like protein 32 |
| SIN_1005818 | c.597_599delAAG | p.Arg200del | −1.49 | HMGB9_ARATH High mobility group B protein 9 |
| Allele from fertile buds | ||||
| SIN_1005818 | c.394 + 2delTa | −1.49 | HMGB9_ARATH High mobility group B protein 9 | |
| SIN_1004626 | c.1008delGa | p.Gln336fs | −1.63 | Y9955_DICDI serine/threonine-protein kinase |
| SIN_1009714 | c.1245 + 1_1245 + 9delGTTGGTTTCa | −1.11 | BRCA1_ARATH (BREAST CANCER SUSCEPTIBILITY) | |
| SIN_1008339 | c.698 + 1delGa | −1.21 | MARH1_MOUSE E3 ubiquitin-protein ligase | |
| SIN_1026641 | c.750-2delAa | −1.25 | PGLR2_PLAAC Exopolygalacturonase (Fragment) | |
| SIN_1014879 | c.1048-2_1048-1insAa | −2.01 | Y5713_ARATH PI-PLC X domain-containing protein | |
| SIN_1021763 | c.1005_1006delCA | p.His335fs | −1.56 | FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 |
| SIN_1022317 | c.712_713dupGT | p.Trp240fs | −1.59 | PP323_ARATH Pentatricopeptide repeat protein |
| SIN_1009152 | c.1653_1654insC | p.Ser552fs | −1.08 | Y5241_ARATH Probable receptor-like protein kinase |
| SIN_1004703 | c.74delC | p.Ala25fs | 1.30 | AMERL_ARATH AMMECR1 domain protein |
| SIN_1019529 | c.18_20dupAGG | p.Gly7dup | 1.54 | DUF3774 Wound-induced protein |
a means InDel may cause Loss of function (LOF), as predicted by SnpEff. See Additional file 7: Table S8 for full information