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. 2016 Nov 10;48:86. doi: 10.1186/s12711-016-0267-0

Table 2.

Number of SNPs (N) and mean correlation, genotype concordance rate, allele concordance rate for each SNP category designated by Affymetrix

Category N Correlation Genotype concordance rate Allele concordance rate
PolyHighResolution 37,619 0.9931 0.9913 0.9956
NoMinorHom 2135 0.9912 0.9882 0.9933
Monohigh 972 0.9188 0.9336 0.9518
CallRateBelowThres 4288 0.9624 0.9513 0.9752
OffTargetVariant 463 0.8215 0.6951 0.8454
Other 5641 0.8313 0.8024 0.8933