Table 6. Top-ranked variants with PIPs of different methods for the eQTL study.

Chr	Target gene	rsid	Position	Dosage allelea	z	CAVIARBF_ENET_CV	CAVIARBF_non	CAVIARBF_top10t
5	IRX4	rs12655062	1890877	A	−26.758	1.0000	1.0000	1.0000
10	SFXN2	rs2902548	104487382	T	−16.385	1.0000	1.0000	1.0000
10	NCOA4	rs10993994	51549496	T	22.665	1.0000	1.0000	1.0000
17	HNF1B	rs3760511	36106313	G	6.623	1.0000	0.0343	1.0000
22	TBX1	rs1978060	19749525	A	21.090	1.0000	1.0000	1.0000
2	SEPT2	rs115271170	242347614	T	29.950	1.0000	1.0000	1.0000
2	RAB17	rs13404216	238491258	A	−11.072	1.0000	0.9999	1.0000
X	GJB1	rs747181	70432708	A	−12.501	0.9999	0.9999	0.9999
5	IRX4	rs6890484	1890577	G	6.966	0.9989	0.9960	0.9960
6	HLA-L	rs114620415	31239821	G	−20.153	0.9986	0.9794	0.9971
6	HLA-L	rs116373865	31239296	G	−23.825	0.9983	0.9782	0.9967
6	HLA-L	rs114172808	31303275	G	12.760	0.9980	0.9968	0.9972
7	HOTTIP	rs10486567	27976563	A	6.358	0.9967	0.1844	0.9975
2	C2orf43	rs72784331	20877436	A	7.622	0.9951	0.8203	0.9963
10	SFXN2	rs3818708	104503584	T	−14.792	0.9899	0.1126	0.9985
17	HNF1B	rs4430796	36098040	G	−7.334	0.9881	0.0835	1.0000
21	TMPRSS2	rs8134378	42893758	A	−14.832	0.9858	0.3305	0.9578
21	TMPRSS2	rs56095453	42893808	A	7.872	0.9841	0.3941	0.9756
17	FAM57A	rs2644715	632686	A	11.924	0.9800	0.9542	0.9552
17	FAM57A	rs2474694	618039	A	−19.853	0.9643	0.7060	0.7953
4	BMPR1B	rs6853490	95544718	G	−10.289	0.9602	0.0319	0.9862
5	COMMD10	rs804152	115670932	C	10.097	0.9577	0.9558	0.9586
1	LOC284581	rs9438393	205782718	G	52.062	0.9500	0.6991	0.9143
2	NOL10	rs7567304	10790029	T	12.020	0.9331	0.9001	0.9329
14	SYNJ2BP	rs1044527	70833819	G	13.428	0.9044	0.5466	0.6407
10	SFXN2	rs2297451	104503459	A	13.710	0.8727	0.0393	0.9808
No. of SNPs (PIP >0.9)						25	14	24

Variants have at least one PIP >0.9 from different methods. Rows in boldface font indicate at least one method outputs PIP <0.9. The variants are sorted by PIPs from CAVIARBF_ENET_CV in descending order. Chr, chromosome.

^aDosage value is the count of this allele.