Table 3.
KIT Ex11 deletion mutant specific DEG, with FDR<0.05 and absolute logFC>0.5.
| ACER2 | CCNYL1 | EYA1 | IRX4 | LOC401321 | NKX3-1 | RN5S217 | SNORA10 | UTRN |
| ADAMTS20 | CD109 | FAHD1 | ITGA2 | LOC642838 | NLRP1 | RN5S335 | SNORA16B | VRK3 |
| ADCK3 | CD3EAP | FAM46A | JAM2 | LOC645166 | NOA1 | RND2 | SNORA2A | WDR63 |
| ADCY1 | CD68 | FAM47A | JMY | LPAL2 | NR1D2 | RNF167 | SNORD111 | WDR77 |
| AKAP8 | CDC25B | FAM59A | KCNA3 | LPCAT2 | NRN1 | RNFT1 | SNORD126 | WWP2 |
| ALDH1L2 | CDT1 | FAM64A | KDELR1 | LPHN3 | OLIG2 | RNU2-7P | SNORD3C | ZC3H6 |
| ALG12 | CES3 | FAM83B | KDELR3 | LPPR4 | PABPC1L | RNU7-6P | SNORD60 | ZFP14 |
| AMIGO2 | CHEK2 | FBXO32 | KIAA0355 | LRFN1 | PAMR1 | RPL13P5 | SNORD71 | ZNF140 |
| ANKRD18DP | CITED1 | FLJ44342 | KIAA1430 | LURAP1L | PAQR4 | RYR2 | SNORD91A | ZNF17 |
| ANKRD20A12P | CKMT1A | FLJ45248 | KIAA1609 | LYSMD2 | PARK2 | SAMD15 | SRCRB4D | ZNF239 |
| ANKRD20A5P | CNN2 | FRAT2 | KLF11 | MALAT1 | PARM1 | SCARA5 | TAS2R31 | ZNF280B |
| ANKRD27 | CNTNAP3B | GALNT6 | KLHL24 | MCL1 | PARP14 | SCARNA21 | TBX15 | ZNF296 |
| ARHGAP20 | CPEB4 | GGA2 | KLHL36 | MCM5 | PARP4 | SEMA6A | TCF25 | ZNF347 |
| ARHGAP35 | CPPED1 | GLTSCR2 | KLRAP1 | MDM2 | PBX1 | SERPINB1 | TFAP4 | ZNF485 |
| ARHGEF1 | CRKL | GRAMD4 | LCMT1 | MED12L | PCDH7 | SGK1 | THOC6 | ZNF502 |
| ARNT2 | CRYBB2P1 | GSPT2 | LIG4 | MGARP | PDP1 | SGSM3 | TIGD4 | ZNF574 |
| ASRGL1 | CSDA | GYPC | LIN37 | MGST1 | PDPR | SHKBP1 | TMEM143 | ZNF581 |
| BACE1-AS | CYP2S1 | GYS1 | LINC00282 | MIR22HG | PHKB | SHMT2 | TMEM159 | ZNF70 |
| BBIP1 | CYP4×1 | H2BFXP | LNP1 | MIR3143 | PKIA | SLC35B2 | TMEM185B | ZNF738 |
| BCL6 | DDTL | HIST1H2BG | LOC100130776 | MIR338 | PLA2G7 | SLC44A2 | TMEM238 | ZNF836 |
| BEX5 | DEDD2 | HIST1H3A | LOC100132439 | MIR3671 | PLXNA2 | SLC45A3 | TNFRSF10D | ZSCAN12P1 |
| BRD2-IT1 | DLC1 | HIST1H3H | LOC100133985 | MIR4263 | PMFBP1 | SLC6A6 | TNFRSF13C | |
| BZW1 | DMRTA1 | HLA-DRB5 | LOC100272228 | MIR4324 | PPP1R13L | SLC7A6OS | TNRC6B | |
| C10orf10 | DYNLL2 | HSDL1 | LOC100287628 | MIR4530 | PPP1R14C | SLC8A1 | TOM1 | |
| C10orf25 | EBF3 | IER5 | LOC100288018 | MIR4773-2 | PROX1 | SLC9A1 | TP53I13 | |
| C19orf54 | ECH1 | IFITM3 | LOC100288520 | MIR548A2 | PRPH | SLC9A2 | TRBV23OR9-2 | |
| C22orf13 | EID3 | IGHD2-21 | LOC100507299 | MRI1 | PRR12 | SLC9A9 | TRBV6-9 | |
| C2orf77 | EIF1 | IL11 | LOC147670 | MTRF1L | PSEN2 | SMOC1 | TRPC1 | |
| CABIN1 | ELAC1 | ILDR2 | LOC147727 | MTSS1 | RAB39B | SMPD1 | TRPS1 | |
| CABLES1 | EMR2 | IMPA2 | LOC284648 | NFIX | RBL2 | SNAR-D | TSC2 | |
| CAMLG | EPHX4 | INPP5D | LOC399815 | NIPSNAP1 | RHBDF1 | SNAR-H | TSSK3 | |
| CAP2 | EPS15L1 | IQCH | LOC400927 | NIPSNAP3A | RN5S180 | SNN | TXNDC17 |