Table 5.
| A. Total proteins identifications from S12 synthetic and scrambled decoy peptide pull-downs for mid-log and stationary phase cross-over experiments | ||
|---|---|---|
| Pull-down | Midlog Total Protein ids |
Stationary Total Protein ids |
| Pull-down | ||
| Total Quantified Protein ids | 185 | 112 |
| S12 peptide specific | 69 | 32 |
| Decoy peptide specific | 69 | 32 |
| Crossover | ||
| Total Quantified Protein ids | 119 | 113 |
| S12 peptide specific | 56 | 36 |
| Decoy peptide specific | 56 | 36 |
| B. S12 specific protein identifications from S12 synthetic peptide pull-downs for mid-log and stationary phase crossover experiments | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Acession | Protein Name | Pull-down | Crossover | ||||||
| No. peptides |
Cl* | log2 Ratio | Ratio* | No. peptides |
Cl* | log2 Ratio | Ratio | ||
| Mid-log phase | |||||||||
| P0A6X3 | Protein hfq | 7 | [4,5] | 4.5 | 23 | 5 | [2,3.2] | 2.6 | 6 |
| Stationary Phase | |||||||||
| P0A6X3 | Protein hfq | 5 | [1.8,2.8] | 2.3 | 5 | 10 | [2.1,3] | 2.6 | 6 |
| P21499 | Rinbonuclease R | 15 | [2.9,3.8] | 3.3 | 10 | 6 | [1.3,2.8] | 2 | 4 |
*
confidence interval widths for ProRata profile likelihood curves. A small CI width corresponds to a more accurate estimation of the ratio difference