Table 4.
Summary of PCR-RFLP genotypes from field samples found to contain Eimeria tenella. The dominant SNP type detected is shown for each region, together with the percentage of samples defined by that SNP type.
| Dominant SNP type (% samples) |
|||||
|---|---|---|---|---|---|
| Marker | North India (n = 86) | South India (n = 53) | North Africa (n = 91) | Nigeria (n = 14) | UK + Ireland (n = 27) |
| M3208 | C (58.1) | T (75.5) | T (98.9) | C/T (50.0)a | T (85.2) |
| M3330 | G (68.6) | G (60.3)a | G (92.3) | G (78.6) | G (100.0) |
| SG580 | A (61.6) | G (64.1) | G (98.9) | A/G (50.0)a | A (100.0) |
| RJ1409 | C (100.0) | C (75.5) | C (100.0) | C (92.9) | T (100.0) |
| M42850 | G (59.3) | G (88.7) | G (100.0) | G (71.4) | G (100.0) |
| M42986 | C (73.3) | G (92.4) | G (100.0) | C/G (50.0)a | G (100.0) |
| M15391 | A (86.0) | C (73.6) | C (100.0) | A (71.4) | A (100.0) |
| BT1959 | G (100.0) | G (96.2) | G (100.0) | G (100.0) | C (100.0) |
| C128593 | C (52.3)a | G (83.0) | G (64.8) | G (64.3) | C (100.0) |
| C1510864 | A (100.0) | A (75.5) | G (56.0)a | A (78.6) | G (100.0) |
| C2F235220 | G (100.0) | G (84.9) | A (74.7) | G (71.4) | A (63.0)a |
a
Most discriminatory marker within each region (column).