Table 3.
Experimental data and classification results according to TFClass
| Total | Experimental | Classified | Average p-value | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TFClass | Code | #TFs | #TFs | P | S | M+ | M- | #TFs | P | S | M+ | M- | All | Margin |
| Uncharacterized | 0.0 | 6 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 5 | 1 | 0 | 0.682 | 0.027 |
| NonO domain factors | 0.2 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 0.679 | 0.022 |
| Leucine-rich repeat proteins | 0.3 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0.679 | 0.022 |
| NFX1-type putative zf factors | 0.4 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 2 | 0 | 0 | 0.673 | 0.016 |
| bZIP | 1.1 | 54 | 25 | 2 | 9 | 3 | 11 | 29 | 10 | 9 | 0 | 10 | 0.720 | 0.150 |
| bHLH | 1.2 | 84 | 29 | 1 | 23 | 3 | 2 | 55 | 0 | 55 | 0 | 0 | 0.943 | 0.539 |
| bHSH | 1.3 | 4 | 1 | 1 | 0 | 0 | 0 | 3 | 3 | 0 | 0 | 0 | 0.759 | 0.128 |
| Nuclear receptors with C4 zfs | 2.1 | 47 | 47 | 1 | 1 | 45 | 0 | 0 | 0 | 0 | 0 | 0 | - | - |
| Other C4 zfs | 2.2 | 17 | 4 | 0 | 0 | 1 | 3 | 13 | 0 | 0 | 0 | 13 | 0.738 | 0.056 |
| Three-zf Kruppel-related factors | 2.3.1 | 26 | 5 | 4 | 1 | 0 | 0 | 21 | 21 | 0 | 0 | 0 | 0.958 | 0.273 |
| Other factors with 3 adjacent zf | 2.3.2 | 15 | 0 | 0 | 0 | 0 | 0 | 15 | 12 | 0 | 3 | 0 | 0.773 | 0.203 |
| More than 3 adjacent zf | 2.3.3 | 327 | 12 | 6 | 1 | 4 | 1 | 315 | 201 | 0 | 114 | 0 | 0.862 | 0.213 |
| Factors multiple dispersed zf | 2.3.4 | 103 | 5 | 1 | 2 | 1 | 1 | 98 | 35 | 58 | 5 | 0 | 0.765 | 0.086 |
| DM-type intertwined zf factors | 2.5 | 6 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | 6 | 0 | 0.704 | 0.166 |
| CXXC zf factors | 2.6 | 7 | 0 | 0 | 0 | 0 | 0 | 7 | 0 | 0 | 7 | 0 | 0.704 | 0.112 |
| C2HC zf factors | 2.7 | 8 | 0 | 0 | 0 | 0 | 0 | 8 | 0 | 0 | 8 | 0 | 0.704 | 0.116 |
| C3H zf factors | 2.8 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 0.704 | 0.116 |
| C2CH THAP-type zf factors | 2.9 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0.704 | 0.084 |
| Homeo domain factors | 3.1 | 198 | 198 | 0 | 0 | 3 | 195 | 0 | 0 | 0 | 0 | 0 | - | - |
| Paired box factors | 3.2 | 9 | 5 | 0 | 1 | 1 | 3 | 4 | 0 | 1 | 2 | 1 | 0.735 | 0.181 |
| Fork head | 3.3 | 56 | 56 | 2 | 3 | 1 | 50 | 0 | 0 | 0 | 0 | 0 | - | - |
| Heat shock factors | 3.4 | 5 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 5 | 0 | 0 | 0.683 | 0.120 |
| Tryptophan cluster factors | 3.5 | 50 | 34 | 23 | 3 | 7 | 1 | 16 | 0 | 0 | 16 | 0 | 0.937 | 0.264 |
| TEA domain factors | 3.6 | 4 | 1 | 0 | 0 | 1 | 0 | 3 | 0 | 0 | 3 | 0 | 0.808 | 0.152 |
| ARID domain factors | 3.7 | 12 | 1 | 0 | 0 | 0 | 1 | 11 | 1 | 10 | 0 | 0 | 0.631 | 0.012 |
| HMG domain factors | 4.1 | 41 | 19 | 0 | 0 | 2 | 17 | 22 | 0 | 0 | 0 | 22 | 0.741 | 0.338 |
| Het. CCAAT-binding factors | 4.2 | 4 | 2 | 2 | 0 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0.817 | 0.357 |
| MADS box factors | 5.1 | 5 | 2 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 0 | 3 | 0.650 | 0.014 |
| SAND domain factors | 5.3 | 7 | 3 | 1 | 0 | 2 | 0 | 4 | 0 | 0 | 4 | 0 | 0.906 | 0.304 |
| RHR factors | 6.1 | 21 | 3 | 0 | 1 | 2 | 0 | 18 | 0 | 0 | 18 | 0 | 0.907 | 0.125 |
| STAT domain factors | 6.2 | 7 | 0 | 0 | 0 | 0 | 0 | 7 | 0 | 0 | 7 | 0 | 0.777 | 0.076 |
| p53 domain factors | 6.3 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 0.777 | 0.062 |
| Runt domain factors | 6.4 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 3 | 0 | 0.777 | 0.062 |
| T-Box factors | 6.5 | 16 | 1 | 0 | 1 | 0 | 0 | 15 | 0 | 12 | 3 | 0 | 0.814 | 0.071 |
| Grainyhead domain factors | 6.7 | 4 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 4 | 0 | 0.777 | 0.122 |
| SMAD/NF-1 DBD factors | 7.1 | 8 | 1 | 1 | 0 | 0 | 0 | 7 | 3 | 4 | 0 | 0 | 0.761 | 0.211 |
| GCM domain factors | 7.2 | 2 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0.844 | 0.268 |
| TATA-binding proteins | 8.1 | 2 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0.805 | 0.171 |
| AT hook factors | 8.2 | 2 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0.634 | 0.001 |
| Cold-shock domain factors | 9.1 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 3 | 0 | 0 | 0.679 | 0.022 |
| Sum | - | 1175 | 457 | 45 | 47 | 77 | 288 | 718 | 289 | 169 | 211 | 49 | ||
The results are shown for Pioneers (P), Settlers (S), positive Migrants (M+) and negative Migrants (M-)