Table 4.
Gene Regulatory Sites discovered by sequence analysis.
| Operator sequence | Strand | Chromosome | Coordinate | Cognate gene |
|---|---|---|---|---|
| TTGGTAACGTTTACAC | − | 7997 | 8012 | yaaJ/b0007 |
| GTTTAACCGCATTCAC | − | 10286 | 10301 | satP/b0010 |
| GCGCAACCGCTACCAC | + | 74440 | 74455 | thiP/b0067 |
| GTGGTGGCGCTTACAC | + | 74460 | 74475 | thiP/b0067 |
| GTGAACGCCATTACAC | + | 103345 | 103360 | ftsQ/b0093 |
| CTGAAAGGGTTTGCAC | + | 118258 | 118273 | nadC/b0109 |
| GTGAACTCTTTTCCAC | + | 151361 | 151376 | yadK/b0136 |
| TTGCAAATGGTTCCAC | − | 151873 | 151888 | yadL/b0137 |
| GTGAAAATGATTGCAC | − | 155580 | 155595 | yadV/b0140 |
| GTGGAAAAGTTTCCAC | − | 234572 | 234587 | gloB/b0212 |
| GTAGAAACGCCTGCAC | + | 329207 | 329222 | betI/b0313 |
| GTGGCATCGTCTTCAC | − | 397495 | 397510 | sbmA/0377 |
| GTTTAAGCACTTTCAC | + | 684934 | 684949 | gltL/b0652 |
| ATGAAATCGATGCCAC | − | 720300 | 720315 | speF/b0693 |
| ATGTAACCGCTACCAC | + | 792021 | 792036 | galE/b0759 |
| GTGGAATCGTTTACAC | + | 792134 | 792149 | galE/b0759 |
| GTGAAGGCGCTGTCAC | − | 863678 | 863693 | fsaA/b0825 |
| GTAAACCCGGTTTCAC | − | 957266 | 957281 | ycaP/b0906 |
| GTCAAAACAGTTGCAC | + | 1074131 | 1074146 | rutR/b1013 |
| TTGCAACCGTTTTCAC | − | 1109176 | 1109191 | opgG/b1048 |
| GTGACATCGCGTCCAC | − | 1110864 | 1113406 | opgH/b1049 |
| GAGGAACCGGTAGCAC | − | 1156743 | 1156758 | holB/b1099 |
| GTGCAAACGCTATCAG | − | 1176651 | 1176666 | lolD/b1117 |
| CTGAAATGGCTTTCAC | + | 1413858 | 1413873 | ralR/b1348 |
| CTGCAAGCGCTTGAAC | + | 1674225 | 1674240 | tqsA/b1601 |
| GAGCAAACGTTTCCAC | + | 1737872 | 1737887 | purR/b1658 |
| ATGGAAGCTTTTCCAC | + | 1771431 | 1771446 | ydiM/b1690 |
| GAGTAACCGTCTACAC | − | 1791263 | 1791278 | ydiU/b1706 |
| GGGAAAACGATGCCAC | − | 1857732 | 1857747 | ydjI/b1773 |
| GTGTCATCGACTGCAC | − | 1896369 | 1896384 | nudL/b1813 |
| GTGCAGGAGATTGCAC | + | 2005842 | 2005857 | fliT/b1926 |
| ATGGAAACATTTACAC | + | 2012342 | 2012357 | yedN/b1932 |
| GTGAAGAGGGTTTCAC | − | 2076495 | 2076510 | yeeS/b2002 |
| ATGCAACCGGTTACCC | − | 2077222 | 2077237 | cbeA/b2004 |
| GTGTACGCATTTCCAC | + | 2108205 | 2108220 | glf/b2036 |
| GTGCACCGGATTTCAC | + | 2239532 | 2239547 | mglB/b2150 |
| TTGAAAGCGGTTACAT | + | 2240618 | 2240633 | galS/b2151 |
| GGGAAACCGTTGCCAC | + | 2241611 | 2241626 | galS/b2151 |
| GCGGAATCGGTTCAAC | + | 2278144 | 2278159 | yejG/b2181 |
| GTGCGAACTCTTCCAC | + | 2414919 | 2414934 | pta/b2297 |
| CTGCATCCGTTTGCAC | + | 2427600 | 2427615 | argT/b2310 |
| CTGCAATCGCCTTCAC | + | 2527286 | 2527301 | yfeH/b2410 |
| ATGCAATCGGTTACGC | − | 2634124 | 2634139 | guaB/b2508 |
| GTGTACTCTATTACAC | − | 2637479 | 2637494 | bamB/b2512 |
| GTAAAGACGATTTCAC | + | 2661317 | 2661332 | iscS/b2530 |
| GTGTCGCCGTTTTCAC | + | 2796513 | 2796528 | ygaU/b2665 |
| GAGGAAGCGGTTCGAC | + | 2817230 | 2817245 | yqaB/b2690 |
| CTGGAAGCGATTGCCC | − | 2832047 | 2832064 | norR/b2709 |
| GTGTGAACATTTCCAC | − | 2837945 | 2837960 | hydN/b2713 |
| AAGAAACCGGTTTCAC | − | 2839425 | 2839440 | ascF/b2715 |
| CTGCAAGCCGTTGCAC | + | 2848912 | 2848927 | hycC/b2723 |
| ATGTAAGCGTTTACCC | + | 2976569 | 2976584 | galR/b2837 |
| GTTCGACCGCTTTCAC | − | 2976830 | 2976845 | galR/b2837 |
| GTTAAAGCATTTACAC | − | 2995106 | 2995121 | ygeK/b2856 |
| ATGCAAGTGCTTTCAC | − | 3041236 | 3041251 | ygfZ/b2898 |
| CTGAAACCGATTACAC | + | 3088004 | 3088019 | galP/b2943 |
| GTGTAAGCGATTACAC | + | 3088186 | 3088201 | galP/b2943 |
| GTTGCAGCGATTTCAC | + | 3133074 | 3133089 | yghR/b2984 |
| GAGGAAGTGATTGCAC | − | 3320107 | 3320122 | yhbX/b3173 |
| CTGGAACCGTATTCAC | + | 3372189 | 3372204 | nanT/b3224 |
| GTGGGATCGAGTACAC | − | 3375005 | 3375020 | dcuD/b3227 |
| GTAAGAACGGTTACAC | − | 3453341 | 3453356 | rpsJ/b3321 |
| AGGAAACCGCTTCCAC | − | 3540370 | 3540385 | feoA/b3408 |
| CAGGAAGCGCTTTCAC | − | 3552425 | 3552440 | malP/b3417 |
| ATCAAATCGATTACAC | − | 3710451 | 3710466 | eptB/b3546 |
| GCGCAACGGCTTCCAC | + | 3760922 | 3760937 | selA/b3591 |
| GCGAAATTGATTACAC | + | 3824831 | 3824846 | trmH/b3651 |
| GCGCAACCGTTCTCAC | + | 3884368 | 3884383 | rpmH/b3703 |
| GGGTAATCGCGTCCAC | − | 4256787 | 4256802 | dgkA/b4042 |
| GTGCAAAAGATTGCAC | − | 4281671 | 4281686 | yjcE/b4065 |
| GGGTAATCGGTTTTAC | − | 4330520 | 4330535 | proP/b4111 |
| GAGAAAACGCTTCAAC | − | 4378149 | 4378164 | ampC/b4150 |
| CTGGCATCGTTTACAC | − | 4433627 | 4433642 | qorB/b4211 |
| AAGTAAGCGTTTCCAC | − | 4449964 | 4449979 | ytfQ/b4227 |
| TTGCCACCGCTTTCAC | − | 4483949 | 4483964 | holC/b4259 |
The motifs in bold letters are also present in Table S2.