Table 2.

Concordance in CN profiles between samples, expressed as percentage of sites in the genome called diploid, gain, or loss in both the LC WGS and MIP arrays for each breast tumor sample, and the percentage of sites called as gain or loss in the LC WGS or MIP results only, respectively. Concordance in only CNV regions in both LC WGS and MIP arrays, expressed as percentage, for each breast tumor sample

Sample	Shared sites (%)	WGS only sites (%)	CNA WGS only (Mbp)	MIP only sites (%)	CNA MIP only (Mbp)	Shared CNV (%)
LPS1	80.0	10.1	263	9.9	260	68
LPS2	83.4	7.7	202	8.8	231	74
LPS3	83.0	9.6	198	7.4	136	72
LPS4	93.1	6.6	173	0.34	8.9	49