Table 1.

TAIR10 genes with translated ORFs identified by RiboTaper

Sample	No. of genes with translated ORFs identified
	Protein-coding genes			Other genes*
	uORF†	Annotated ORF	dORF	ncRNA	Pseudogene	Transposable elements
Root	136	16,657	2	23	27	31
Shoot	87	16,107	8	14	14	40
Total	187	18,153	10	27	37	57

There are 27,416 protein-coding genes, 394 ncRNAs, 924 pseudogenes, and 3,903 transposable element genes annotated in TAIR10.

^*Excluding rRNA, tRNA, and snoRNA genes.

^†CPuORFs are annotated as protein-coding genes in TAIR10 and were manually grouped into uORFs here.