Table S3.
Datasets and GEO accession numbers
| Description | Stage | GEO accession no. | Used for chromatin state maps |
| H3 | EE | GSE22722 | x |
| H3 | L3 | GSE22734 | x |
| H3K27ac | EE | GSE22748 | x |
| H3K27ac | L3 | GSE25355 | x |
| H3K27me1 | EE | GSE26178 | x |
| H3K27me1 | L3 | GSE26179 | x |
| H3K27me3 | EE | GSE26180 | x |
| H3K27me3 | L3 | GSE22730 | x |
| H3K36me1 | EE | GSE22744 | x |
| H3K36me1 | L3 | GSE26181 | x |
| H3K36me2 | EE | GSE22717 | x |
| H3K36me2 | L3 | GSE22729 | x |
| H3K36me3 | EE | GSE22719 | x |
| H3K36me3 | L3 | GSE22731 | x |
| H3K4me1 | EE | GSE22747 | x |
| H3K4me1 | L3 | GSE25357 | x |
| H3K4me2 | EE | GSE22741 | x |
| H3K4me2 | L3 | GSE22732 | x |
| H3K4me3 | EE | GSE49739 | x |
| H3K4me3 | L3 | GSE28770 | x |
| H3K79me2 | EE | GSE22738 | x |
| H3K79me2 | L3 | GSE26182 | x |
| H3K79me3 | EE | GSE22739 | x |
| H3K79me3 | L3 | GSE26183 | x |
| H3K9me2 | EE | GSE22740 | x |
| H3K9me2 | L3 | GSE22733 | x |
| H3K9me3 | EE | GSE22720 | x |
| H3K9me3 | L3 | GSE22728 | x |
| H4K20me1 | EE | GSE22754 | x |
| H4K20me1 | L3 | GSE25358 | x |
| H4K8ac | EE | GSE26184 | x |
| H4K8ac | L3 | GSE25356 | x |
| HTZ-1 | MxE | GSE50302 | x |
| HTZ-1 | L3 | GSE49717 | x |
| Pol II | EE | GSE25788 | |
| Pol II | L3 | GSE25792 | |
| H3K36me3 | EE | GSE38180 | |
| H3K27me3 | EE | GSE38180 | |
| MES-4 | EE | GSE38180 | |
| H3K36me3 | mes-4 RNAi EE | GSE38159 | |
| H3K27me3 | mes-4 RNAi EE | GSE38159 |