Table 1.

Related to Figure 1. SRA file numbers for re-analyzed Baubec et al. (2013) datasets.

DOI: http://dx.doi.org/10.7554/eLife.21964.005

Name	SRA file number	Number of mapped reads (Bowtie, up to three mismatches)
WT Mbd3 ChIP replicate 1	SRR696667	11,601,021
WT Mbd3 ChIP replicate 2	SRR696673	14,166,151
TKO Mbd3 ChIP	SRR769560	34,666,789
WT Mbd2 ChIP replicate 1	SRR527128	9,441,721
WT Mbd2 ChIP replicate 2	SRR527129	15,116,380
WT Mbd2 ChIP replicate 3	SRR696658	12,545,659
TKO Mbd2 ChIP replicate 1	SRR527161	24,282,816
TKO Mbd2 ChIP replicate 2	SRR696682	7,605,171
WT Mbd1a ChIP replicate 1	SRR527126	11,566,092
WT Mbd1a ChIP replicate 2	SRR527127	19,528,778
TKO Mbd1a ChIP	SRR527159	22,070,693
WT Mbd1b ChIP replicate 1	SRR527147	14,320,842
WT Mbd1b ChIP replicate 2	SRR527148	22,371,797
TKO Mbd1b ChIP	SRR527160	7,503,068
WT Mbd4 ChIP replicate 1	SRR527131	13,864,108
WT Mbd4 ChIP replicate 2	SRR527132	23,655,753
TKO Mbd4 ChIP replicate 1	SRR669321	13,670,155
TKO Mbd4 ChIP replicate 2	SRR669322	11,251,853
WT MeCP2 ChIP replicate 1	SRR527133	19,229,199
WT MeCP2 ChIP replicate 2	SRR527134	11,771,499
WT MeCP2 ChIP replicate 3	SRR696681	12,118,572
TKO MeCP2 ChIP replicate 1	SRR527162	17,003,233
TKO MeCP2 ChIP replicate 2	SRR696683	28,586,006