Table 3. Indel mutation events in the chloroplast genomes of Haloxylon ammodendron and H. persicum.
| Region | Location | Types | HA | HP | Length (bp) | Directiona |
|---|---|---|---|---|---|---|
| accD-psaI | Intergenic | Homopolymeric indel | A A | – | 2 | Insertion |
| atpA-atpF | Intergenic | Homopolymeric indel | T | – | 1 | Insertion |
| atpF | Intron | Homopolymeric indel | – | T | 1 | Deletion |
| ndhI-ndhA | Intergenic | Homopolymeric indel | – | A | 1 | Deletion |
| ndhJ-ndhK | Intergenic | Homopolymeric indel | – | T | 1 | Deletion |
| psbI-trnS | Intergenic | Homopolymeric indel | – | T | 1 | Deletion |
| psbI-trnS | Intergenic | Homopolymeric indel | – | A | 1 | Deletion |
| rbcL-accD | Intergenic | Homopolymeric indel | – | A | 1 | Deletion |
| rps18-rpl20 | Intergenic | Homopolymeric indel | T | – | 1 | Insertion |
| trnE-trnT | Intergenic | Homopolymeric indel | – | A | 1 | Deletion |
| trnK-rps16 | Intergenic | Homopolymeric indel | A | – | 1 | Insertion |
| trnK-rps16 | Intergenic | Homopolymeric indel | A | – | 1 | Insertion |
| trnL | Intron | Homopolymeric indel | – | A | 1 | Deletion |
| trnL | Intron | Homopolymeric indel | A | – | 1 | Insertion |
| trnL | Intron | Homopolymeric indel | – | T | 1 | Deletion |
| trnR-aptA | Intergenic | Homopolymeric indel | – | T | 1 | Deletion |
| atpH-atpI | Intergenic | Indel | T T T A T T | – | 5 | Insertion |
| clpP-psbB | Intergenic | Indel | – | G T C T T | 5 | Deletion |
| petL-petG | Intergenic | Indel | – | G | 1 | Deletion |
| rpoB-trnC | Intergenic | Indel | – | T G T A T T | 5 | Deletion |
| rpoB-trnC | Intergenic | Indel | T A C A A | – | 5 | Insertion |
| rrn23 | Coding | Indel | – | A A T T A A | 6 | Deletion |
| rrn23 | Coding | Indel | – | T T A A T T | 6 | Deletion |
Notes.
a
The chloroplast genome of H. ammodendron was used as a standard.
- HA
- H. ammodendron
- HP
- H. persicum