TABLE 4 .

Select loci with SNPs distinguishing subclades, described by their PubMLST allele assignment

Locusa	PubMLST IDb	Patternc	Allele in subcladed					No. of SNPsf
			I	II	III	IVe	IVa
mafS7	NEIS2090	II	1	18	1	1g	1	56
nadC	NEIS1770	II	1	237	1	1	1	30
nor	NEIS1548	III/IVh	149	149	1	1	1	59
galU	NEIS0581	III/IVh	230	230	351	351	351i	36
nhbA	NEIS2109	III/IVh	17	17	72	72	72	1
opcB	NEIS1877	II/III/IV	1	2	2	2j	2	2
folP	NEIS1609	II/III/IV	14k	1	1	1	1	67
lgtA	NEIS1902	IV	17l	17	17	37l	37	2
lgtB	NEIS1901	IV	79	79	79	77m	77	4
rpmA	NEIS1848	IV	1	1	1	4	4	1
rpsO	NEIS0552	IVa	1	1	1	1	16	1

^aLocus names are taken from PubMLST annotation if available; otherwise, the mapping of Fam18 annotations to the reference sequence is used.

^bID, identifier.

^cSNP patterns are categorized by which subclades are distinguished from the outgroup.

^dThe predominant allele is reported for each subclade; minor alleles are noted in the footnotes.

^eCounts for subclade IV do not include isolates from subclade IVa.

^fThe SNP count is the number of polymorphisms separating the two listed PubMLST alleles.

^gmafS7 is not present in M22765.

^hM07161 shares alleles with subclades I/II for nor and galU but with III/IV for nhbA.

ⁱM25432 has galU allele 2.

^jM22160 and M22189 have opcB allele 47.

^kM25419 and M10208 have folP allele 4.

^llgtA is not found in M22772 and Nm3686.

^mM22772 has lgtB allele 67.