Table 2. Significantly (P<0.05) differentially expressed PCOS proteins.

Spot No.	Protein name	Accession No.	MW (kDa)	PI	MOWSE Score	Number of unique peptides	P value	Fold of change (PCOS/Ctrl)
2247	Calmodulin 1	P62158	16.8	4.09	62	3	3.4e-005	5.09
1480	Protein SET	Q01105	33.5	4.23	54	2	2.9e-005	2.19
1713	14-3-3 protein epsilon	P62258	29.3	4.63	71	2	3.9e-005	1.94
877	Heat shock protein 90B1	P14625	92.7	4.76	96	3	5.2e-005	1.84
1241	Calreticulin	P27797	48.3	4.29	83	5	4.5e-005	1.75
1248	Tubulin-β chain	P07437	50.1	4.78	68	4	3.7e-005	1.72
1659, 1680	Polymerase I and transcript release factor	Q6NZI2	43.4	5.51	56	2	3.0e-005	1.56, 1.65
1666	Complement component 1 Q subcomponent-binding protein	Q07021	31.7	4.74	74	2	4.0e-005	1.63
2026	Vimentin	P08670	53.7	5.06	89	3	4.8e-005	1.63
833	Neutral alpha-glucosidase AB	Q14697	107	5.74	72	3	3.9e-005	1.53
2280, 2285	Retinol-binding protein 1	P09455	16.01	4.99	90, 82	3, 2	4.8e-005, 4.4e-005	1.53, 1.52
1931	Membrane-associated progesterone receptor component 1	O00264	21771.8	4.56	86	5	4.9e-005	1.51
1155	Antithrombin-III	P01008	53.03	6.32	65	3	3.5e-005	1.5
1057	78 kDa glucose-regulated protein	P11021	72.4	5.07	81	4	4.4e-005	-1.52
1265	Prelamin-A/C	P02545	74.4	6.57	58	3	3.1e-005	-1.55
1540	Tropomyosin beta chain	P07951	32.9	4.66	63	4	3.4e-005	-1.58
998, 1001, 1009, 1026, 1036, 1040, 1043, 1046, 1074, 1075	Serum albumin	P02768	71.3	5.92	80,72,95,64,71, 54, 59, 48, 75, 82	5, 3, 2, 3, 3, 4, 2, 4, 2, 3	4.3e-005, 3.9e-005, 5.2e-005, 3.5e-005, 3.9e-005, 2.9e-005, 3.2e-005, 2.6e-005, 4.1e-005, 4.5e-005	-1.63, -1.58, -1.54, -1.68, -1.72, -1.60, -1.63, -1.71, -1.70, -1.55
1030	Annexin A6	P08133	76.2	5.42	86	3	4.7e-005	-1.77