Table 2. Genes differentially expressed at an |FC| ≥ 2 and FDR ≤ 0.05 between subtypes in both cohorts.
| Gene Symbol | GeneST (FDR) | GeneST (FC) | Jorissen (FDR) | Jorissen (FC) | consistent |
|---|---|---|---|---|---|
| C10orf99 | 3.3E-02 | -2.5 | 4.3E-03 | -2.4 | yes |
| COL12A1 | 1.4E-03 | 3.6 | 4.8E-06 | 2.1 | yes |
| CXCL10 | 4.9E-02 | 2.8 | 2.3E-06 | 2.8 | yes |
| FCGR2A | 1.0E-02 | 2.5 | 7.1E-14 | 2.4 | yes |
| HSPA4L | 1.6E-02 | 2.8 | 9.1E-11 | 2.6 | yes |
| IL1B | 7.0E-03 | 3.2 | 8.9E-09 | 2.7 | yes |
| IL8 | 5.4E-03 | 4.1 | 6.1E-06 | 2.9 | yes |
| MMP1 | 4.6E-02 | 3.0 | 2.7E-05 | 2.6 | yes |
| MMP12 | 1.3E-03 | 4.4 | 5.0E-08 | 3.0 | yes |
| NR4A2 | 1.5E-02 | 2.2 | 4.8E-06 | 2.1 | yes |
| PKIB | 4.1E-03 | -2.2 | 7.7E-05 | 2.0 | no |
| PLA2G4A | 3.2E-02 | 2.4 | 1.9E-04 | 2.3 | yes |
| PLK2 | 5.8E-04 | 2.0 | 3.8E-11 | 2.8 | yes |
| POSTN | 1.8E-02 | 3.7 | 2.1E-07 | 3.0 | yes |
| PTGS2 | 2.6E-03 | 3.9 | 1.2E-08 | 3.0 | yes |
| REG1A | 3.3E-02 | 6.2 | 3.2E-02 | 2.5 | yes |
| TDO2 | 4.1E-02 | 3.2 | 7.5E-06 | 2.0 | yes |
| TNFAIP6 | 3.7E-03 | 3.0 | 5.1E-09 | 2.3 | yes |
| VCAN | 2.1E-02 | 2.4 | 7.1E-08 | 2.3 | yes |