Table 2. Ten most highly overexpressed genes in Alex5 control cultures (compared with Alex2) and overexpressed genes coding for proteins potentially involved in secondary metabolism.
| Contig | Mean FC value | Pfam family name | Assessed function |
|---|---|---|---|
| Top 10 overexpressed genes in Alex5 | |||
| contig52451 | 977.12 | Fatty acid desaturase | Unsaturated fatty acid synthesis |
| contig10253 | 318.80 | — | — |
| contig22596 | 205.62 | — | — |
| contig22292 | 156.37 | — | — |
| contig03283 | 143.74 | — | — |
| contig14894 | 78.45 | — | — |
| 58180097 | 59.28 | — | — |
| contig05597 | 51.09 | EF-hand domain pair (2) | Calcium-ion binding |
| contig22152 | 45.17 | — | — |
| Atam02515 | 42.39 | — | — |
| Prominent secondary metabolite protein coding genes overexpressed in Alex5 | |||
| contig48765 | 10.39 | Methyltransferase domain | Methyl group transfer |
| Atam13914 | 5.12 | Methyltransferase domain | Methyl group transfer |
| Atam35211 | 4.65 | EamA-like transporter family | Transport |
| Atam25791 | 3.31 | Acetyltransferase (GNAT) family | Acetyl group transfer |
| Atam23762 | 2.94 | Cytochrome P450 | Redox reactions |
| contig33556 | 2.86 | Aldo/keto reductase family | Redox reactions |
| contig34741 | 2.04 | ABC-2 type transporter | Transport |
| contig01330 | 1.99 | Taurine catabolism dioxygenase TauD, TfdA family | Redox reactions |
| Atam01694 | 1.88 | NAD-dependent epimerase/dehydratase family | Redox reactions |
| contig06638 | 1.84 | EamA-like transporter family | Transport |
| contig16321 | 1.80 | ABC-2 type transporter | Transport |
| contig37655 | 1.79 | Periplasmic binding protein | Transport |
| Atam12516 | 1.76 | Acyltransferase family | Acyl group transfer |
The table includes fold-change (FC) values and the assigned Pfam families for each gene, as well as the attributed function of each annotatable gene.