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. 2016 Nov 18;11(11):e0165995. doi: 10.1371/journal.pone.0165995

Table 1. Primers and PCR conditions used for DNA sequence amplifications in this study.

Gene Primer name Amplification primers (5'-3') PCR Conditions Amplicon size
16S rDNA 16s F CGCCAGGGTTTTCCCAGTCACGACGCGTAGAGTTTGATCCTGGCTCAG 94°C 5 min; 94°C 1 min, 60°C 1 min, 72°C 1 min, 35 cycles; 72°C 10 min 1200 bp
16s R AGCGGATAACAATTTCACACAGGAGACGGGCGGTGTGTRCA
cpn60 H1594 CGCCAGGGTTTTCCCAGTCACGACGACGTCGCCGGTGACGGCACCACCAC 94°C 5 min; 94°C 30 s, 57°C 30 s, 72°C 45 s, 35 cycles; 72°C 10 min 555 bp
H1595 AGCGGATAACAATTTCACACAGGACGACGGTCGCCGAAGCCCGGGGCCTT
gyrB gyr-f CGCCAGGGTTTTCCCAGTCACGACAAGCAGGGCAAGAGCGAGCTGTA 94°C 2.5 min; 94°C 30 s, 50°C 45 s, 72°C 1 min, 35 cycles; 72°C 7 min 600 bp
gyr-r AGCGGATAACAATTTCACACAGGACAAGGTGCTGAAGATCTGGTC
avrBs2 AvrBs2-F CGCCAGGGTTTTCCCAGTCACGACGGACTAGTCCTGCCGGTGTTGATGCACGA 94°C 2 min; 94°C 1 min, 60°C 1 min, 72°C 1 min, 35 cycles; 72°C 7 min 780 bp
AvrBs2-R AGCGGATAACAATTTCACACAGGACCGCTCGAGCGGTGATCGGTCAACAGGCTTTC