Table 1. An example of DEXSeq output for brain and heart tissues.
| ID | stat | padj | brain | heart | log2 fold | count1 | count2 |
|---|---|---|---|---|---|---|---|
| chr8_ANK1-:E006 | 124.56 | 4.08E-26 | 4.39 | 20.56 | 2.23 | 5 | 357 |
| chr10_ABLIM1-:E015 | 121.81 | 1.58E-25 | 3.62 | 18.91 | 2.39 | 1 | 507 |
| chr10_ACBD7-:E003 | 7.75 | 0.04 | 8.47 | 0.36 | -4.57 | 415 | 0 |
| chr10_ADD3+:E015 | 68.33 | 3.04E-14 | 12.16 | 1.59 | -2.94 | 144 | 0 |
| chr10_CCSER2+:E006 | 19.46 | 0.00027 | 3.59 | 15.95 | 2.15 | 7 | 161 |
| chr10_NEBL-:E017 | 394.064 | 5.60E-84 | 3.88 | 18.06 | 2.22 | 1 | 1601 |
The ID column lists the gene name and the exon number. The stat column includes the likelihood ratio test (LRT) statistic value. Brain and heart columns contain the exon usage coefficients for both tissues. The count columns include the actual counts of the mapped reads.