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. Author manuscript; available in PMC: 2016 Nov 18.
Published in final edited form as: J Phys Chem B. 2016 May 20;120(33):8707–8721. doi: 10.1021/acs.jpcb.6b04439

Figure 6. CPU time versus no. of solute atoms for the pairwise charge view method and the P3M method.

Figure 6

The same test set of nucleic acids was modeled with the full PB equation (epsout=80.0, epsin=4.0, istrng=1000) as in Figure 5. The x-axis is the number of atoms in each nucleic acids, the y-axis is the cost of CPU time for computing the energies. The trend lines are fitted functions in the form of y = ax2 + bx + c.