Fig. 2.

Web interface of ChIP-Peak. a Input form. The inputs correspond to the example presented in this paper. A server-resident ChIP-seq sample from the MGA repository has been selected through the data access menu. Alternately, users could upload their own data by clicking on the “Upload custom data” radio button. b Output page. The peak list can be downloaded in various formats. Hyperlinks are provided for sending the peak list directly to external servers for peak annotation. The “Sequence Extraction Option” enables users to extract sequences around the peak centers in Fasta format. Direct navigation buttons enable downstream analysis with other tools from the ChIP-Seq and SSA servers