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. Author manuscript; available in PMC: 2017 Oct 17.
Published in final edited form as: Chem Res Toxicol. 2016 Sep 21;29(10):1741–1754. doi: 10.1021/acs.chemrestox.6b00244

Table 3.

Steady-State Kinetic Parameters for dNTP Incorporation Opposite N2-AnthG by Human Wild-Type Pol κ (1–526) and Variants

pol κ(1–526) dNTP Km (µM) kcat (s−1) kcat/Km (s−1 µM−1) finsa relative efficiencyb
wild-type A 110 ± 10 0.0028 ± 0.0001 2.5 × 10−5 0.0012
T 340 ± 40 0.0087 ± 0.0003 2.6 × 10−5 0.0013
G 85 ± 11 0.0024 ± 0.0001 2.8 × 10−5 0.0014
C 53 ± 7 1.0 ± 0.04 2.0 × 10−2 1 1

E29K A 200 ± 30 0.0013 ± 0.0001 6.7 × 10−6 0.00046
T 350 ± 50 0.0055 ± 0.0002 1.6 × 10−5 0.0011
G 150 ± 10 0.0014 ± 0.00003 9.3 × 10−6 0.00064
C 87 ± 13 1.3 ± 0.3 1.5 × 10−2 1 0.75

T44M A 330 ± 80 0.0067 ± 0.0005 2.0 × 10−5 0.0071
T 380 ± 80 0.0072 ± 0.0006 1.9 × 10−5 0.0068
G 100 ± 20 0.00064 ± 0.00006 6.4 × 10−6 0.0023
C 200 ± 20 0.55 ± 0.02 2.8 × 10−3 1 0.14

F192C A 220 ± 30 0.0028 ± 0.0001 1.3 × 10−5 0.00079
T 540 ± 60 0.010 ± 0.0004 1.9 × 10−5 0.0012
G 46 ± 3 0.0019 ± 0.00004 4.1 × 10−5 0.0026
C 58 ± 16 0.95 ± 0.08 1.6 × 10−2 1 0.80

R246X A 130 ± 20 0.00074 ± 0.00003 5.7 × 10−6 0.0020
T 670 ± 190 0.0023 ± 0.0002 3.4 × 10−6 0.0012
G 93 ± 22 0.00052 ± 0.00004 5.6 × 10−6 0.0020
C 90 ± 32 0.26 ± 0.03 2.9 × 10−3 1 0.15

E292K A 220 ± 40 0.0022 ± 0.0002 1.0 × 10−5 0.00043
T 330 ± 80 0.0086 ± 0.0006 2.6 × 10−5 0.0011
G 76 ± 13 0.0015 ± 0.0001 2.0 × 10−5 0.00087
C 44 ± 8 1.0 ± 0.1 2.3 × 10−2 1 1.2

R298H A 630 ± 130 0.00069 ± 0.00005 1.1 × 10−6 0.00079
T 780 ± 170 0.0011 ± 0.0001 1.4 × 10−6 0.0010
G 210 ± 30 0.00065 ± 0.00002 3.1 × 10−6 0.0022
C 400 ± 60 0.55 ± 0.03 1.4 × 10−3 1 0.070

A471V A 220 ± 40 0.0019 ± 0.0001 8.5 × 10−6 0.0010
T 650 ± 120 0.0058 ± 0.0004 9.0 × 10−6 0.0011
G 210 ± 50 0.0016 ± 0.0001 7.8 × 10−6 0.00092
C 130 ± 20 1.1 ± 0.1 8.5 × 10−3 1 0.43

T473A A 410 ± 70 0.0014 ± 0.0001 3.5 × 10−6 0.0014
T 510 ± 50 0.0015 ± 0.0001 3.0 × 10−6 0.0012
G 200 ± 30 0.00072 ± 0.00003 3.6 × 10−6 0.0014
C 210 ± 30 0.54 ± 0.03 2.6 × 10−3 1 0.13

R512W A 290 ± 60 0.00045 ± 0.00003 1.5 × 10−6 0.0014
T 620 ± 80 0.0017 ± 0.0001 2.8 × 10−6 0.0026
G 220 ± 40 0.00023 ± 0.00001 1.1 × 10−6 0.0010
C 390 ± 80 0.42 ± 0.03 1.1 × 10−3 1 0.055
a

Misinsertion frequency, calculated by dividing kcat/Kmfor each dNTP incorporation by the kcat/Km for dCTP incorporation opposite N2-AnthG.

b

Relative efficiency, calculated by dividing kcat/Km of each pol κ(1–526) for dCTP incorporation opposite N2-AnthG by kcat/Km of wild type pol κ(1–526) for dCTP incorporation opposite N2-AnthG.