Table 3.
pol κ(1–526) | dNTP | Km (µM) | kcat (s−1) | kcat/Km (s−1 µM−1) | finsa | relative efficiencyb |
---|---|---|---|---|---|---|
wild-type | A | 110 ± 10 | 0.0028 ± 0.0001 | 2.5 × 10−5 | 0.0012 | |
T | 340 ± 40 | 0.0087 ± 0.0003 | 2.6 × 10−5 | 0.0013 | ||
G | 85 ± 11 | 0.0024 ± 0.0001 | 2.8 × 10−5 | 0.0014 | ||
C | 53 ± 7 | 1.0 ± 0.04 | 2.0 × 10−2 | 1 | 1 | |
E29K | A | 200 ± 30 | 0.0013 ± 0.0001 | 6.7 × 10−6 | 0.00046 | |
T | 350 ± 50 | 0.0055 ± 0.0002 | 1.6 × 10−5 | 0.0011 | ||
G | 150 ± 10 | 0.0014 ± 0.00003 | 9.3 × 10−6 | 0.00064 | ||
C | 87 ± 13 | 1.3 ± 0.3 | 1.5 × 10−2 | 1 | 0.75 | |
T44M | A | 330 ± 80 | 0.0067 ± 0.0005 | 2.0 × 10−5 | 0.0071 | |
T | 380 ± 80 | 0.0072 ± 0.0006 | 1.9 × 10−5 | 0.0068 | ||
G | 100 ± 20 | 0.00064 ± 0.00006 | 6.4 × 10−6 | 0.0023 | ||
C | 200 ± 20 | 0.55 ± 0.02 | 2.8 × 10−3 | 1 | 0.14 | |
F192C | A | 220 ± 30 | 0.0028 ± 0.0001 | 1.3 × 10−5 | 0.00079 | |
T | 540 ± 60 | 0.010 ± 0.0004 | 1.9 × 10−5 | 0.0012 | ||
G | 46 ± 3 | 0.0019 ± 0.00004 | 4.1 × 10−5 | 0.0026 | ||
C | 58 ± 16 | 0.95 ± 0.08 | 1.6 × 10−2 | 1 | 0.80 | |
R246X | A | 130 ± 20 | 0.00074 ± 0.00003 | 5.7 × 10−6 | 0.0020 | |
T | 670 ± 190 | 0.0023 ± 0.0002 | 3.4 × 10−6 | 0.0012 | ||
G | 93 ± 22 | 0.00052 ± 0.00004 | 5.6 × 10−6 | 0.0020 | ||
C | 90 ± 32 | 0.26 ± 0.03 | 2.9 × 10−3 | 1 | 0.15 | |
E292K | A | 220 ± 40 | 0.0022 ± 0.0002 | 1.0 × 10−5 | 0.00043 | |
T | 330 ± 80 | 0.0086 ± 0.0006 | 2.6 × 10−5 | 0.0011 | ||
G | 76 ± 13 | 0.0015 ± 0.0001 | 2.0 × 10−5 | 0.00087 | ||
C | 44 ± 8 | 1.0 ± 0.1 | 2.3 × 10−2 | 1 | 1.2 | |
R298H | A | 630 ± 130 | 0.00069 ± 0.00005 | 1.1 × 10−6 | 0.00079 | |
T | 780 ± 170 | 0.0011 ± 0.0001 | 1.4 × 10−6 | 0.0010 | ||
G | 210 ± 30 | 0.00065 ± 0.00002 | 3.1 × 10−6 | 0.0022 | ||
C | 400 ± 60 | 0.55 ± 0.03 | 1.4 × 10−3 | 1 | 0.070 | |
A471V | A | 220 ± 40 | 0.0019 ± 0.0001 | 8.5 × 10−6 | 0.0010 | |
T | 650 ± 120 | 0.0058 ± 0.0004 | 9.0 × 10−6 | 0.0011 | ||
G | 210 ± 50 | 0.0016 ± 0.0001 | 7.8 × 10−6 | 0.00092 | ||
C | 130 ± 20 | 1.1 ± 0.1 | 8.5 × 10−3 | 1 | 0.43 | |
T473A | A | 410 ± 70 | 0.0014 ± 0.0001 | 3.5 × 10−6 | 0.0014 | |
T | 510 ± 50 | 0.0015 ± 0.0001 | 3.0 × 10−6 | 0.0012 | ||
G | 200 ± 30 | 0.00072 ± 0.00003 | 3.6 × 10−6 | 0.0014 | ||
C | 210 ± 30 | 0.54 ± 0.03 | 2.6 × 10−3 | 1 | 0.13 | |
R512W | A | 290 ± 60 | 0.00045 ± 0.00003 | 1.5 × 10−6 | 0.0014 | |
T | 620 ± 80 | 0.0017 ± 0.0001 | 2.8 × 10−6 | 0.0026 | ||
G | 220 ± 40 | 0.00023 ± 0.00001 | 1.1 × 10−6 | 0.0010 | ||
C | 390 ± 80 | 0.42 ± 0.03 | 1.1 × 10−3 | 1 | 0.055 |
Misinsertion frequency, calculated by dividing kcat/Kmfor each dNTP incorporation by the kcat/Km for dCTP incorporation opposite N2-AnthG.
Relative efficiency, calculated by dividing kcat/Km of each pol κ(1–526) for dCTP incorporation opposite N2-AnthG by kcat/Km of wild type pol κ(1–526) for dCTP incorporation opposite N2-AnthG.