Table 3.
Important biology network-related databases.
| Database | URL | Data type |
|---|---|---|
| STRING [39] | http://string-db.org/ | Protein-protein interactions |
| Reactome [40] | http://www.reactome.org/ | human biological processes |
| KEGG [41] | http://www.genome.jp/kegg/ | Pathway, disease, drug |
| BioGRID [42] | https://wiki.thebiogrid.org/ | PPI/genetic interaction |
| STITCH [43] | http://stitch.embl.de/ | Chemical-protein interaction |
| HPRD [44] | http://hprd.org/ | Protein-protein interaction (PPI) |
| DIP [45] | http://dip.doe-mbi.ucla.edu/dip/Main.cgi | PPI |
| IntAct [46] | http://www.ebi.ac.uk/intact/ | Molecular interaction |
| WikiPathways [47] | http://www.wikipathways.org/index.php/WikiPathways | Biological pathways |
| TRED [48] | https://cb.utdallas.edu/cgi-bin/TRED/tred.cgi?process=home | TF-gene interaction |
| InterDom [49] | http://interdom.i2r.a-star.edu.sg/ | Domain interaction |
| SignaLink [50] | http://signalink.org/ | Signaling pathways |