TABLE 2.
Position, frequency, estimated effect, and significance of the top SNPs and positional candidates potentially associated with phenotypes
| Phenotype | Top SNP | Chromosome:position | Frequency | Odds ratio ± range (P) | Genes |
|---|---|---|---|---|---|
| LST | BICF2P1154155 | 13:38698768 | 22.2% LST+, 3.6% LST− | 7.45 ± 6.68 (9.46 × 10−6) | COMMD5, SHARPIN |
| TNF-α | BICF2S22949424 | 20:45037155 | 64% TNF-α+, 20% TNF-α− | 7.33 ± 5.41 (8.25 × 10−9) | JAK3, IL12RB1, IFI30, CCRL2, CCR2, CCR3, XCR1, CXCR6 |
| IL-10 | BICF2G630213974 | 17:26778592 | 40% IL-10+, 11% IL-10− | 5.27 ± 4.42 (1.04 × 10−6) | LTBP1, RASGRP3 |
| TGF-β | BICF2G630236868 | 5:86823011 | 36% TGF-β+, 6% TGF-β− | 8.91 ± 8.90 (6.31 × 10−8) | CCR8, CX3CR1, SELE, SELL, SELP, FASLG, AKTIP, RAB39A, ATM, CAMK1G |