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. 2016 Nov 21;17:944. doi: 10.1186/s12864-016-3230-0

Table 3.

Tissue specific gene signatures: list of genes appearing differentially expressed in each tissue-MSC and fibroblasts when contrasted to each other

Tissue-stromal cells Number of genes Specific genes
AD-MSC 9 AC104654.2, AP000695.2, AP000843.1, MATN3, MFAP3L, PCDH9, PDLIM3, PPAPDC1A, Z69713.1
BM-MSC 37 ACAN, AGT, ANK3, AP001422.1, C20orf103, C20orf197, C5orf23, CHRDL1, CXCL16, DLX5, ENTPD1, EPHX1, EYA1, EYA2, EYA4, FBXO16, FMO3, HEY2, IGF2, IGFBP2, ITGA7, JAG1, KCNMB1, KIAA1217, KLHL3, LBP, LEPR, MAOB, NOTCH3, NPR3, RP11-145A3.3, SFTA1P, SLPI, TM4SF20, VCAM1 (CD106), ZNF423
PL-MSC 123 AC003092.2, AC012409.1, AC026250.2, AC069155.1, AC090625.2, ADAM23, ADRA1D, AL121578.3, ALDH1A1, ALDH1A2, AMIGO2, ANO4, AR, ATRNL1, BRIP1, C10orf57, C12orf59, C16orf52, C3orf72, C9orf167, CACNA1H, CADPS2, CAMK1G, CAPN6, CARD16, CKS2, CNTN4, CTSH, CYTSB, DGKH, DNAM1 (CD226), DTNA, E2F7, ETV4, F2RL1, FABP4, FAM105A, FAM155A, FAM60A, FJX1, GAS2L3, GBP4, GCLC, GLRXP3, GPR126, GPR37, HMGA2, HOXD10, HSD17B2, HTR1D, HTR2B, IFIT2, IFIT3, INA, KCNA3, KRT19, LAMA1, LCP1, LIMS1, LPCAT2, LRRC1, MAP3K5, MAPK8, MCTP1, MSI2, MUM1L1, NCAM1 (CD56), NEFM, NETO2, NID1, NNAT, NR2F1, PAMR1, PCDH10, PDCD1LG2, PDGFC, PLAT, PLBD1, PLCXD3, PMAIP1, RARB, RASGRP1, REN, RP11-117P22.1, RP11-251 J8.1, RP11-332P22.1, RP11-548O1.1, RP11-87H9.2, RP4-706A16.2, RPS6KA6, S1PR3, SCN9A, SERPINB2, SGIP1, SLC16A4, SLC1A2, SLC4A8, SLITRK4, SNCA, SNCAIP, SNORD27, SOCS1, SORBS1, SOX5, SSTR1, ST6GALNAC5, STRA6, SYPL2, SYT14, SYT16, SYTL5, TFPI2, TMEM154, TMEM51, TNFSF15, TNFSF18, TNFSF4, TRHDE, TRPC4, ZNF516, ZNF804A
FIB 60 AC008440.2, AC112217.2, ADAM33, ADH1B, AIM1, AK5, APCDD1, APOD, AQP9, BMPER, C9orf21, CCBE1, CCDC102B, CCRL1, CDON, CH25H, CLIC2, COLEC12, CYP7B1, DKK2, DNM1, GLDN, GLI3, GRPR, GTSF1, IGSF10, KIAA0802, KIT, LRRC15, MASP1, MBNL3, MMP27, OMD, OR1H1P, OR1Q1, OSR2, PAX3, PDGFRL, PHACTR3, PLEKHG1, PLXNC1, PRLR, RCAN2, ROBO2, RP11-392O17.1, RXFP1, SECTM1, SEMA3D, SIPA1L2, SLC9A9, STK32B, SVIL, TDO2, TFAP2C, TGFBR3, THBS4, THRB, TWIST1, TWIST2

Gene symbols in bold correspond to relevant genes that are commented in the discussion