Table 1.
Preconception Carrier Screening | Prenatal Including PGD & NIPT | Newborn Screening | Suspected Rare Disease | Oncology and Tumor Profiling | Common Disease | Pharmacogenomics | |
---|---|---|---|---|---|---|---|
Test Purpose | Risk assessment | Risk assessment and diagnosis | Therapeutic intervention, risk assessment, disease monitoring | Diagnosis, therapeutic intervention | Risk assessment, diagnosis, (individualized) therapeutic intervention | Risk assessment, diagnosis, disease monitoring, therapeutic intervention | Individualized therapeutic intervention |
Example Tests | Panels that include cystic fibrosis, fragile X syndrome, sickle cell disease | Panels that include trisomies 13, 18, 21, and microdeletions | Cystic fibrosis | Whole genome sequencing (WGS) and whole exome sequencing (WES) | Comprehensive genomic profiling in NSCLC | Panel test for cardiovascular disease and diabetes risks | Panel tests for response to abacavir, warfarin, and carbamazepine |
Possible Negative Consequences | Increased confusion and unwarranted anxiety (given variable penetrance, VUSs, especially with expanded panels) | Mistaken reliance on NIPT as diagnostic leads to terminations of unaffected fetuses; tests enter clinic without established PPVs | Newborn screening panels rapidly expand beyond AAP and ACMG recommendations; increased anxiety, confusion, and waste of resources | Patients and providers burdened with costs as payers refuse to cover, citing lack of evidence of clinical validity | Poor quality tests and unresolved technical challenges affecting tests lead to patient harm from therapeutic mismatches | Patients seek out interventions without established benefit, possibly with associated risks | Testing is costly but not does not lead to improved outcomes over standard of care |
Possible Positive Consequences | Expanded screening lowers disease burden | NIPT as initial screen reduces exposure to risks of CVS and amniocentesis; expanded screening lowers disease burden | Appropriate expansion of newborn screening leads to improved outcomes | Catalyst for coverage policy innovation; leads to more effective therapeutic approaches, or precision medicine | Leads to more effective therapeutic approaches, or precision medicine | Patients are able to access effective interventions earlier, preventing disease or slowing disease progression | Ensures delivery of effective therapeutics and avoidance of toxicities, or precision medicine |
NSCLC: non-small cell lung cancer, VUS: variant of uncertain significance, NIPT: non-invasive prenatal testing, PPV: positive predictive value, AAP: American Academy of Pediatrics, ACMG: American College of Medical Genetics, CVS: chorionic villus sampling