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A summary of q-value (FDR) thresholds used in the CDAP to filter major TCGA datasets.
| Dataset | Max Spec. FDR |
MAYU FDR |
Target Genes |
|---|---|---|---|
| TCGA_Colorectal_VU_Proteome | 0.115% | 1.00% | 5561 |
| TCGA_Breast_BI_Proteome | 0.077% | 1.00% | 10599 |
| TCGA_Breast_BI_Phosphoproteome | 0.185% | 0.99% | 7526 |
| TCGA_Ovarian_JHUZ_Proteome | 0.165% | 1.00% | 8588 |
| TCGA_Ovarian_JHUZ_Glycoproteome | 1.000% | 0.32% | 891 |
| TCGA_Ovarian_PNNL_Proteome | 0.271% | 0.99% | 7471 |
| TCGA_Ovarian_PNNL_Phosphoproteome | 1.000% | 0.46% | 5161 |
