Table 3. Discriminatory index and clustering rate of the 15-locus MIRU-VNTR set applied to the different Mycobacterium tuberculosis strains.
Isolates | Total number of isolates | Number of clustered isolates | Number of isolates in each cluster | Clustering rate (%) | HGDI |
---|---|---|---|---|---|
Cavitary TB | 192 | 56 | 2–14 | 24.5% | 0.988 |
Non-cavitary TB | 193 | 42 | 2–8 | 14.5% | 0.997 |
Beijing genotype | 330 | 111 | 2–22 | 27.3% | 0.990 |
Ancient Beijing genotype | 70 | 4 | 2 | 2.9% | 0.999 |
Modern Beijing genotype | 260 | 107 | 2–22 | 33.9% | 0.985 |
Non-Beijing genotype | 55 | 0 | 0 | 0.0% | 1.000 |
Total | 385 | 111 | 2–22 | 23.4% | 0.993 |
Abbreviations: Hunter–Gaston Discriminatory Index, HGDI; mycobacterial interspersed repetitive unit variable number of tandem repeats, MIRU-VNTR; tuberculosis, TB.