Table 3. Variants with likely functional effects.
ID | Sex | Age | Gene | Function | Coding effect | Nuclotide variant | AA variant | MAF | rsID | Evidence (primary literature) |
---|---|---|---|---|---|---|---|---|---|---|
1 | F | 1 | RYR2 (NM_001035.2) | Intracellular calcium homeostasis | Missense | c.1358G>C | p.(S453T) | 0.03%a | rs761911597 | 44 |
2 | M | 3 | KCNH2 (NM_000238.3) | Potassium channel | Missense | c.442C>T | p.(R148W) | 0.05%a | rs139544114 | |
3 | F | 11 | DSP (NM_004415.2) | Desmosomal | Nonsense | c.2836G>Tb | p.(E946*) | — | — | |
4 | M | 15 | CACNB2 (NM_201596.2) | L-type calcium channel | Missense | c.641G>C | p.(S214T) | 0.08%a | rs149253719 | 45 |
MYBPC3 (NM_000256.3) | Sarcomeric | Missense | c.649A>G | p.(S217G) | 0.1%c | rs138753870 | 30 | |||
5 | F | 15 | KCNH2 (NM_000238.3) | Potassium channel | Missense | c.526C>T | p.(R176W) | — | rs36210422 | 46 |
6 | M | 22 | CACNB2 (NM_201596.2) | L-type calcium channel | Missense | c.1883A>Cb | p.(H628P) | — | — | |
7 | F | 24 | SCN5A (NM_001099404.1) | Sodium channel | Missense | c.496G>A | p.(A166T) | 0.01%a | rs201232332 | |
LMNA (NM_170707.2) | Nuclear | Missense | c.1256G>Ab | p.(R419H) | — | — | ||||
8 | M | 26 | SCN5A (NM_001099404.1) | Sodium channel | Missense | c.1127G>Tb | p.(R376L) | — | — | |
9 | F | 28 | MYBPC3 (NM_000256.3) | Sarcomeric | Missense | c.2992C>G | p.(Q998E) | — | rs11570112 | 47 |
10 | M | 35 | MYBPC3 (NM_000256.3) | Sarcomeric | Missense | c.3742G>A | p.(G1248R) | 0.04%c | rs202147520 | 28 |
11 | F | 36 | KCNE2 (NM_172201.1) | Potassium channel | Missense | c.29C>T | p.(T10M) | 0.03%a | rs199473648 | 48 |
12 | M | 37 | RYR2 (NM_001035.2) | Intracellular calcium homeostasis | Missense | c.12430C>Ab | p.(R4144S) | — | — | |
13 | F | 39 | KCNJ8 (NM_004982.3) | Potassium channel | Nonsense | c.1066C>Tb | p.(R356*) | — | — | |
14 | M | 41 | RYR2 (NM_001035.2) | Intracellular calcium homeostasis | Missense | c.13931A>Gb | p.(Y4644C) | — | — | |
15 | M | 42 | KCNQ1 (NM_000218.2) | Potassium channel | Missense | c.514G>A | p.(V172M) | — | rs199472694 | 49 |
TTN (NM_001267550.1) | Sarcomeric | Nonsense | c.38356A>Tb | p.(K12786*) | — | — | ||||
16 | F | 45 | PKP2 (NM_004572.3) | Desmosomal | Missense | c.184C>A | p.(Q62K) | 0.03%c | rs199601548 | 50 |
17 | M | 45 | SCN5A (NM_001099404.1) | Sodium channel | Missense | c.1019G>Ab | p.(R340Q) | — | — | 29 |
18 | F | 46 | MYBPC3 (NM_000256.3) | Sarcomeric | Missense | c.442G>A | p.(G148R) | — | rs397516050 | 27 |
TNNC1 (NM_003280.2) | Sarcomeric | Missense | c.433G>A | p.(D145N) | 0.01%c | rs142759728 | ||||
19 | F | 46 | SCN5A (NM_001099404.1) | Sodium channel | Missense | c.6046G>A | p.(V2016M) | — | rs762981322 | 51 |
20d,e | M | 48 | DTNA (NM_001390.4) | Dystrophin complex | Missense | c.257C>Tb | p.(S86F) | — | — | |
21d,e | M | 49 | KCNQ1 (NM_000218.2) | Potassium channel | Missense | c.592A>G | p.(I198V) | — | rs199472700 | 52 |
Abbreviations: AA, amino acid; F, female; M, male; MAF, minor allele frequency.
Clinical data and genetic variants with likely functional effects, including details of the functions of the gene, nucleotide- and amino-acid change and frequency in a healthy population.
Minor allele frequency in a Danish population study.22
Novel variant.
Minor allele frequency in European–American populations in the NHLBI GO Exome Sequencing Project (ESP) (http://evs.gs.washington.edu/EVS/).
DNA purified from spleen samples.
DNA was whole genome amplified.