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Comparison of different methods under Model Structure II
| LASSO | E.Net | MCP | Linear | Polynom. | IBS | |
|---|---|---|---|---|---|---|
| n=500
|
||||||
| #SNPs selected | 2.1 | 2.1 | 3.1 | 2.1 | 3.0 | 2.3 |
| Capt. rate | 0.3 | 0.3 | 0.4 | 0.3 | 1.0 | 0.2 |
| FPR | 0.65 | 0.73 | 0.73 | 0.58 | 0.24 | 0.92 |
| Rank-sum | 11.7 | 11.6 | 11.6 | 12.3 | 18.8 | 10.1 |
| Cover. Prob. | 0.1 | 0.1 | 0.2 | 0.1 | 1.0 | 0.1 |
| n=1000
|
||||||
| #SNPs selected | 2.6 | 2.9 | 4.1 | 2.0 | 2.4 | 2.8 |
| Capt. rate | 0.4 | 0.4 | 0.5 | 0.4 | 1.0 | 0.3 |
| FPR | 0.67 | 0.66 | 0.71 | 0.50 | 0.11 | 0.90 |
| Rank-sum | 12.5 | 12.5 | 12.4 | 12.8 | 19.0 | 10.6 |
| Cover. Prob. | 0.2 | 0.2 | 0.3 | 0.1 | 1.0 | 0.2 |
