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. Author manuscript; available in PMC: 2017 Dec 1.
Published in final edited form as: Proteins. 2016 Oct 1;84(12):1797–1809. doi: 10.1002/prot.25162

Figure 6.

Figure 6

(A) The interfacial residues of PHD1 domain involved in the interaction in the KDM5C quaternary structure. The interfacial residues of PHD1 domain are marked with green while the rest of the PHD1 domain are marked with orange. The substrate histone peptide is marked with red while the rest of the region including JmjC and ZF domain are marked with blue. (B) The RMSD results for the KDM5B PHD1 domain bound to substrate peptide complex. (C) The RMSF results for the KDM5B PHD1 domain. (D) The predicted interfacial residues in ARID domain. The ARID domain, JmjC domain, DNA and inter-domain region are marked with pink, purple, gray, and blue, respectively. The predicted interfacial residues in ARID domain are colored with yellow. (E) The predicted interfacial residues in PHD and JmjC domains. The PHD domain, JmjC domain, histone substrate and inter-domain regions are marked with green, purple, red, and blue, respectively. Predicted interfacial residues in PHD and JmjC domains are colored with yellow.